Ceratina calcarata (carpenter bee): 108625627
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Entry
108625627 CDS
T06061
Name
(RefSeq) paired amphipathic helix protein Sin3b isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
108625627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccal03036
]
108625627
Chromosome and associated proteins [BR:
ccal03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
108625627
REST complex
108625627
Heterochromatin formation proteins
Other heterochromatin formation proteins
108625627
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
Tricorn_C1
Motif
Other DBs
NCBI-GeneID:
108625627
NCBI-ProteinID:
XP_017881252
UniProt:
A0AAJ7J0L2
LinkDB
All DBs
Position
Unknown
AA seq
1558 aa
AA seq
DB search
MKRVRGLDEVASPAAATLKHSSSVSAGSGLGGGGGGLEFHSSSGIGVVVPGQAVRTVGSK
EMPGSIQFGTAQTQQQYAGAIVVPTAAPSPIKGSGSTGLGTCGSSSVNTGGGLHGGIGGG
SGSNHSMSSQQPTPGAQSQVHAQQQPTIRQKVHSSNVTPLASTPPGTSLGVGSGSQQFQR
LKVEDALSYLDQVKYKFSDQPQVYNDFLDIMKEFKSQSIDTPGVITRVSHLFKGHPELIV
GFNTFLPPGYKIEVQANEQGYAFQVSVSMPSPTATHTATLSQHHCTVNVGSPPVASPPTQ
PAKAPPVLQIMQGTGNIHHSLANNISNNSLTVHAPSPPPPVPAYNNSHVSAAQVQAVSQA
LSQAQDGIPTSGQTQQNQPVEFNHAINYVNKIKNRFQGQPDKYKRFLEILHTYQKEQRNL
KESGHMGGTSGSGISGGVKHLTEAEVYSQVAKLFENQEDLLEEFGQFLPDATNQQSSLSN
KTTINDHAPIVKKPLGPKAPYNNSGTVSRDIRESSGTGGTMERESRDHRDRERERDSRSG
IRDMNSVQKFSHSTGQLKRSPSFSPSVTAAVAAAAAAGNSHHIPHGPPPLKKHKVSSMRE
CVTIAEAGKYGSLNDYAFFDKVRKALRSQEVYENFLRCLVLFNQEIVSKSELVQLVTPFL
GRFPELLRWFKDFLGHLPESSNTTNAANANSSALNVEALPNNVVRSHQERPQGDLAMEID
YTACKRLGASYCALPKSYVQPKCTGRTQLCKEVLNDTWVSFPTWSEDSTFVTSRKTQYEE
FIYRCEDERFELDGVIETNASTIRVLEGVHKKMNRMSQEELQKFKLDDCLGGSSPTIHQR
ALKRIYGDKAADIIDGLKKNPVVAVPVVLRRLKSKEEEWREAQKGFNKIWREQNEKYYLK
SLDHQGINFKQNDVKALRSKSLFNEIETLYDERHEQVDDGNGDGQNNTGPHLVLPYKDKS
VLDDAANLLIHHVKRQTAIHKEDKQRIKLLLKHFIPDLFFHPRQELSDDERDEDDEKEDL
NVACSNSSQSVTMSATTPLGGGLQANRNKTSVSPNASSNASVKTEPDVKVPIHAMSNDPE
EAYTLFMGSNNWYLFLRLHHVLCERLTKMYDRAVALAEEESRYKQQRKESTAVALRLKPK
NEIEIEDYYPAFLDMVKNVLDGNMESTAYEDTLREMFGIHAYIAFTLDKVVTYAVRQLQH
LVSDPICQQCMELFQREQRQPKESSGAGGLCATAYMRLGAEMSYQRKAEKAMADENCFKI
YIYKKDCKMTMELLDTEGDEAMDNSCREREREGVTVSGKWSTYVERFSAPAAGQTSPKDT
PALTDNEPTTNHPVSNDQAGRGGRGRKRKNTDISKKIDGNGWSSLGRILAGRKPVFLYRN
VRQWRKRAARMMSAPVANTDSEKAAESTEKEKLDSMDALLQQPTLRLADSGDAADIINSD
ETQCRFNPNSYQMLYVASKEAFLYKQNSFSRARECHPTVTKHLNSKFHQWLASWASKNVA
DVQHRLCQDWLMGRYENLIPHKTRVITDNDQTRSPYRQYNRYRVERLQPDGLLTEPCV
NT seq
4677 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtgttcgtgggctggacgaggtagcatcaccagcagcagcaacgttaaagcac
tcgtcgtcggtgagtgcgggaagtggcttaggcggcggaggaggtggcttggagttccat
tcgagcagcggaataggcgttgtcgtacctggccaagcagttcgaacagtcggttcgaaa
gaaatgccgggaagcatacaattcggaactgcccaaactcaacagcaatacgccggggca
atcgtagtaccgaccgcggctccgtcccccattaagggaagtggatccacgggactcggt
acgtgtggcagtagcagtgtaaataccggtggtgggttacacggtggaataggtggtggt
agtgggagcaaccatagtatgagttcccagcagcctacgccaggagcacagagtcaagtt
catgcccagcagcaaccgacgataaggcaaaaggtccattctagcaatgtgacaccgtta
gcttctactccaccgggcaccagtctgggtgtcggcagcgggtcccagcagtttcagaga
ttaaaagtggaggatgcattgtcttatttggatcaagtcaagtataaatttagcgatcaa
ccccaggtgtacaatgattttttggacattatgaaagagtttaaatcgcagagcatagac
acaccgggggtaataacgagagtgagccacttgttcaaaggacatcccgagctcatcgtc
ggtttcaatacttttcttccacccggatataagatagaggtgcaagcgaacgagcaggga
tacgcgtttcaagtgtcggtcagtatgccgagcccgacagcaacgcacaccgccactttg
tctcagcatcactgcaccgttaacgttggttcgcctcccgttgccagtccgccgacgcaa
ccggcgaaagctccgccagttttacaaataatgcagggaaccgggaacatacatcactcg
ctggccaacaatatctctaataacagtttgacggtgcacgcgccttcgccaccaccgccg
gtaccggcgtataataattcgcatgttagcgcggctcaagtacaggccgtgagtcaagcg
ttgagccaagcacaagacggtataccgactagcgggcaaactcaacagaatcaaccagtt
gagtttaaccatgcgattaattacgttaacaaaattaagaatcgattccaaggccagccg
gacaaatacaagagatttttagaaatcctccatacttatcaaaaggagcaacggaatctg
aaagagtctggacacatgggtggcacgagcggctctggcatatccgggggtgtgaaacat
ttgacggaagccgaagtttacagtcaggtcgctaaattgttcgagaatcaagaagatttg
ctcgaggagtttggccagttcttgcccgatgctaccaatcaacagagttcactgagcaac
aagactacgatcaatgatcacgcgccgatcgtgaagaaaccattgggacctaaagcacct
tacaataattcggggactgtttctcgggatatccgtgagtcgagcggcaccggcggtacg
atggaacgtgaaagtcgtgatcacagggatcgcgaacgagaacgagatagcagatccggt
atacgagatatgaatagtgtacaaaagtttagtcactctacgggacagttgaaaagaagt
ccgtcattctcaccttcggtaactgccgccgtcgccgccgctgccgccgccggcaactcc
caccatataccgcacggtccgcctccgttgaagaagcataaggtgtcgtctatgcgcgaa
tgcgtcacgatagcggaagctggaaaatacggcagtctcaacgattacgctttcttcgac
aaggttcgcaaagcgttgagatcgcaagaggtgtacgaaaatttccttaggtgtttggtc
ctgtttaatcaagagatagtttcgaaatcggagctggtgcagttggtaacgccgtttctc
ggtcgattccccgaactcttgcgctggttcaaagatttcctgggccatttgccggaatcg
tcgaacacgacgaacgcggcgaacgcgaacagcagcgcgttgaacgtagaagcgctaccg
aacaatgtagtgcgaagtcatcaagagcgaccgcaaggcgacctggcgatggaaatcgat
tacacggcgtgcaaacgcttaggggcgtcgtactgcgcgttaccaaagtcttatgttcaa
ccaaagtgtacaggaagaacgcaattgtgcaaagaagtcctcaacgacacgtgggtttcg
tttccgacttggtccgaggacagtacgttcgtaacgtcgaggaaaacgcaatatgaggaa
ttcatttaccgatgcgaggatgaacgattcgagttagacggtgttatagaaactaacgcg
tcgaccatcagagttctcgagggtgttcacaaaaagatgaacagaatgagtcaggaagag
cttcagaaattcaaactggatgactgtctcggtggcagttctcccacgattcatcagaga
gctctgaagaggatatacggtgacaaggctgccgatatcatagacggtcttaagaaaaat
cctgtggtagccgtccccgtggtccttcgtcgtcttaaaagcaaagaagaggaatggcgg
gaagcgcagaagggtttcaataaaatctggagggaacagaacgaaaagtactacttgaag
tctctggatcatcaaggcatcaatttcaagcagaacgacgtgaaagccttgaggtcgaag
agcctgttcaacgagatcgaaacgttgtacgacgagaggcacgaacaagtggacgacggg
aacggcgacggacaaaataacaccggccctcatctcgtgttaccttacaaagataaatct
gtcctggacgatgcggcgaatcttctgattcatcacgtgaaacgtcaaacggccatccac
aaggaagacaagcaacgaataaagctgttgttgaagcatttcataccagatcttttcttc
catccacgacaggaattgagcgatgacgagagagatgaagatgacgagaaggaagacctg
aacgtagcctgtagcaattcgagccagtcggtaacgatgagtgccaccactccgctaggc
ggtggactccaagcgaacagaaataaaacttcggtgtctccgaacgcgtcttccaacgcg
tcggtcaagaccgagcccgatgtcaaagtaccgatccatgccatgtcgaacgatcccgag
gaagcgtacacgctcttcatgggtagtaacaattggtaccttttcttgaggttacaccac
gtactgtgcgaaagattaacgaagatgtacgatcgggccgtggctcttgccgaggaagaa
tcgcggtacaaacagcagcggaaagagagtacggcggtcgcgctgcgattgaaacctaag
aacgagattgagatcgaggactattatcctgcatttttggacatggttaagaatgtcctg
gacggaaacatggagagtaccgcttatgaggacacgctgcgagagatgttcggtattcac
gcgtacatagctttcacgctggacaaggtcgtaacgtatgctgtcagacaattacagcat
ttggtctcggacccgatatgccagcagtgtatggaactattccaacgggaacagcggcaa
ccgaaagagagtagtggcgcgggtggtttatgcgctaccgcatacatgagactcggtgcg
gaaatgtcgtatcagcggaaagctgagaaagctatggccgacgagaactgcttcaagata
tacatttacaagaaggactgtaaaatgacgatggaattgttggacacggaaggcgacgag
gcgatggacaacagttgtagagaaagggaaagggaaggagttacggtatctggaaaatgg
tctacgtatgttgagaggttttctgctcccgcagctggtcagaccagtccgaaagacacc
cctgccttaacagacaatgagccgacgaccaatcatcctgtgagtaacgaccaggcagga
aggggggggaggggcagaaagcgcaagaacactgacattagcaagaagatcgatgggaac
ggttggagttctttaggcagaattttggcaggacgtaaacctgtgtttctttaccgtaat
gttagacaatggagaaaaagagctgcgaggatgatgtcggcgcccgtggccaataccgat
tccgagaaagctgcagagtcaacggagaaagagaagttggactctatggatgcgctgctg
cagcaaccaactttaagattagcagattccggcgatgcggcggacataatcaattccgac
gagacacaatgccgtttcaatcccaacagctatcaaatgctttacgtcgccagtaaggaa
gcgttcctgtacaaacagaattccttcagccgtgccagagagtgtcatccaaccgtaacg
aaacacttgaactctaagttccatcaatggctcgcatcctgggcatctaaaaacgttgcg
gacgttcaacaccgattgtgccaagattggttgatgggacgttacgaaaacttgattcct
cataagacgcgagtgatcacggacaacgatcagacgagatcgccttatcgacaatacaat
cgttaccgcgtggaacgcttacaaccagacggtcttctgacggaaccgtgcgtgtaa
DBGET
integrated database retrieval system
