Ceratina calcarata (carpenter bee): 108625965
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Entry
108625965 CDS
T06061
Name
(RefSeq) high mobility group protein DSP1-like isoform X1
KO
K10802
high mobility group protein B1
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03410
Base excision repair
ccal04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108625965
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108625965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccal03036
]
108625965
03400 DNA repair and recombination proteins [BR:
ccal03400
]
108625965
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccal04147
]
108625965
Chromosome and associated proteins [BR:
ccal03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
108625965
DNA repair and recombination proteins [BR:
ccal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
108625965
MMR (mismatch excision repair)
Other MMR factors
108625965
Exosome [BR:
ccal04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
108625965
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
108625965
NCBI-ProteinID:
XP_017881823
UniProt:
A0AAJ7J0R7
LinkDB
All DBs
Position
Unknown
AA seq
475 aa
AA seq
DB search
MSEHHRVAGGWGTPSPGNREDGSGGTAWWPSGLNAVSAEQQQQQQQAQQQAQQQAQQQAQ
QQAQQQAQQQAQQQQNLHQHLMNQQQQLSQQQQQAQQQHHQDIVRSTAAATQQLFSYKMA
SSFQNPATTGTQSNPVSTSTPVGSCMRGGYDYRLGTGPGAGGGVPGTPSAPPPGVQWWYP
GGVMDAGQNNLHQQLQGQQQQQHLSPITTQTSTPPVMSPTILNSYLQRIEEEWKARNYNH
NFLINESKNHQLQQLSQQQNNLQQNNAQSLQQRDNMPRGKDSKPRGRMTAYAFFVQTCRQ
EHKKKHPEEKIVFREFSKKCAMRWKTMSDKEKKRFHEMAEKDKKRYDTEMQNYTPPKGES
KGRGKKRKHIKDHNAPKRSLSAFFWFCNDERGKVKMLNPEYGVGDIAKELGKKWSDADPE
TKSKYEAMAEKDKARYEREMTAYKKKMKDGAPVVGVVPANTVKSDSEEEYKEDDE
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaacaccaccgcgtagccggtggctggggcacaccgagcccaggaaaccgcgag
gacggctccggtggtaccgcctggtggccctccggtttgaacgccgtatcggccgaacag
caacaacagcagcagcaagcacaacagcaagcacaacagcaagcacagcagcaagcgcag
cagcaggcgcagcagcaagcgcaacagcaagcgcagcagcaacagaatctgcaccaacac
ttgatgaaccagcagcaacagctatctcagcagcagcagcaggctcagcaacagcatcat
caggatatcgttaggagtaccgccgccgctacccagcagcttttctcctacaagatggcc
tccagctttcagaatccagccaccacgggcacacagtcgaatcccgtctcgacttcgacg
ccggtcggctcctgcatgaggggaggatatgattatagattaggaacggggcccggagcg
ggcggcggtgtacctggtacaccttccgcaccaccgcctggcgtacagtggtggtatcca
ggtggagttatggacgccggacagaacaacctgcatcagcaattgcagggccaacagcag
cagcagcacctctcgcccattaccacacaaacgtccacgccccccgttatgtccccgacg
atattaaatagctatttgcaaagaatagaagaggagtggaaagcacggaattacaatcat
aatttcttgattaacgagagtaaaaatcaccagttacagcaattgtcgcagcaacagaat
aatctccagcaaaataacgctcagagtttgcaacagcgtgacaacatgccgagaggaaag
gattcaaagccaaggggacggatgaccgcgtacgcgttcttcgtacaaacgtgtcgccag
gaacacaagaagaagcatcccgaggagaagatcgtcttccgggagttctcgaaaaagtgt
gcaatgaggtggaagaccatgtccgacaaagagaagaaacgtttccatgaaatggcagag
aaagataaaaagagatacgacacggagatgcagaattacacgccaccgaaaggggagagt
aaaggcaggggcaagaaacgcaaacacatcaaagatcataacgctcctaaaagatcgcta
tccgcgttcttctggttctgcaacgacgagcgtggcaaagtgaaaatgcttaatcccgaa
tacggtgtaggcgacatcgccaaggagcttggtaagaaatggtcagacgcagatcctgaa
accaaatctaagtacgaggctatggcggagaaggacaaggctcgatacgaaagagaaatg
accgcgtacaaaaagaagatgaaagacggggcaccggtggtgggagtggtaccagcgaat
actgtaaaaagcgacagcgaagaggagtacaaggaggacgatgaatag
DBGET
integrated database retrieval system
