Ceratina calcarata (carpenter bee): 108626662
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Entry
108626662 CDS
T06061
Name
(RefSeq) exosome complex component RRP42 isoform X1
KO
K12589
exosome complex component RRP42
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108626662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccal03019
]
108626662
Messenger RNA biogenesis [BR:
ccal03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
108626662
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
108626662
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
108626662
NCBI-ProteinID:
XP_017882952
UniProt:
A0AAJ7J235
LinkDB
All DBs
Position
Unknown
AA seq
291 aa
AA seq
DB search
MAETVLSIGEKTFILHGVDADFRNDGRRQCEYRTMEIETKLMPQTHGSARLRIGNTDILV
GVKVELDAPHADSPDEGKLEFFVDCSATATPAFEGKGGDDLATEISNTLTVAYQTHDAID
LRTLCILPHKKCWKIFVDVLILQCGGNLFDAVGAAVKAALYSTEIPRITAATLDGGEPDI
QLSDNSYDCIQLDTSNYPVIVTLCKIGDNCITDPNSEEEVCSASSIVMSVLPSGKISSII
KLGHGSITPTTFNKMLQMGQNIGIRLNESLMKTLMKENKLGQKKQIFGFLK
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaactgttttaagtattggtgaaaaaactttcattctacatggagtagatgca
gactttagaaacgatggtagacgacagtgcgagtatcgaacaatggaaattgaaactaaa
ttgatgccacaaactcatggatcagccagattacgtataggcaacacagatatacttgtt
ggtgttaaagtagaacttgatgcacctcatgctgatagcccagatgaaggaaaattggag
ttttttgttgactgctctgctaccgcaactccagcatttgaggggaaaggtggcgatgat
ttagcaactgaaataagcaataccctaacagttgcttatcaaacacacgatgctattgat
ttgagaacattatgtatattgccccacaaaaaatgttggaaaatatttgttgatgtattg
attcttcaatgtggaggcaatctttttgatgcagtaggagctgcagttaaggctgcatta
tacagtacagaaataccaagaattacagctgcaacacttgacggtggagaaccagatatt
cagttatcagataattcttatgattgtattcaactggacacaagtaattacccagtcatt
gtaactctctgtaaaattggtgataattgtattacagatccaaactctgaagaagaagta
tgcagtgcaagtagtatagttatgtctgtattaccaagtggtaaaatctcatcaataatt
aaattaggtcatggaagcattacacctactacttttaataaaatgttgcagatgggtcaa
aatataggaatacgattgaatgaaagtcttatgaaaacactgatgaaggagaacaaactt
ggacagaagaagcaaatctttggattcctcaaatga
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