Ceratina calcarata (carpenter bee): 108627304
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Entry
108627304 CDS
T06061
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108627304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccal03019
]
108627304
Messenger RNA biogenesis [BR:
ccal03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108627304
mRNA degradation factors
5'-3' decay
Decapping complex
108627304
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
108627304
NCBI-ProteinID:
XP_017883974
UniProt:
A0AAJ7J3I9
LinkDB
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Position
Unknown
AA seq
730 aa
AA seq
DB search
MADFFFGFDTSLERSNLEDGLECPFEEDDLGGEEEYDALNDETFGSEATIGDWEKDHEKL
AEITESSRPHNQNNLSKKNGVNANIEDNLSHLVLDEKEGIVPRPGVWDSPNFSSPKPIPS
LPLPPGLTSNVCTVEELEKGLTANRQPVGLNKPIQGQHPHQQQQQKQDGTHLFKSLSLPQ
RFPPGLGIPPPHPVVLPPNVRFPHPQFLQHPRLLPNQTGNLLRYPVPPHLMLPHGPQRQP
MHGSFPNNFPPPHSNLCLPPFLRTDHGMISPFPGNQSSHHQQHSYAHSGNQRHLNRPFPH
GEQQQGNHQLYFKNNQHQQRNYDRNNQRQYHYHHYCQGVNGVTGSGEYDEYAGLMSSREK
QWLINIQLLQLNTTEPYVDDYYYTVFCDRKNKQTLNQEQKDKKRNNNNNNYQRDSRDRDQ
PLPVLSRPAYIPMQFENSLGKLQFASVIAPRKVIDMDVVPNGDPQLASQIQQKDTKRTRQ
LLLEIERLYIIQLKLEDLHNPLVLLNEQQQRENQEGEKETNNEKKTKPELISMMLSSLLQ
LIQDDKLASMLGIRKGKMLLLRFLPYLNVTEYCNQLEELWKAIFRGLTVIGRRDSHLLTS
LYSEFQRWFGNIQEFDTILRLARSLSDFTSQPIKNNNLAFALSNKFGVSVIASMFEQAEK
IYPTDDALSAEWSSFIANIIDIIGETPPCIAPCQPIAADTLNQHLNRLSHLKCGRYTTLE
LLLTDINSSR
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggcagacttctttttcggtttcgatacgtcgcttgaaaggagcaatttagaagatggt
ctggagtgtcccttcgaggaggacgacctcgggggagaggaagagtacgatgctttgaac
gacgagaccttcggctctgaagccactatcggggattgggagaaagaccatgaaaaactt
gcggaaatcacggaatccagtcgtcctcacaatcagaataacttgagtaaaaaaaatgga
gttaatgcgaatattgaagataatttatctcatttggtgttagatgagaaagagggtatt
gtcccacgtcctggggtatgggacagtcccaacttttcctctcccaaacctattccctcg
ttacccttgccaccggggttaacgtccaacgtctgcaccgtcgaggaattggagaaaggt
ttgaccgcgaacagacagccggtaggattgaacaaacctattcaaggtcaacatccacat
cagcagcagcaacagaagcaagatggaacgcacctgttcaagtctttatcccttcctcaa
cgcttccccccaggactgggtataccacccccgcatcctgttgttttaccaccaaacgtg
agattcccacatcctcaatttctacagcatcctagattactgcccaatcaaactggaaat
ctattgagatatcctgtaccgcctcacttaatgttgccacacgggccacagagacagccc
atgcatggctcgtttccgaataattttccacctccacactcgaatttgtgcctccctcca
tttctgcgaacggaccacggcatgatatctccttttcccggaaatcagtctagtcaccat
cagcaacattcttacgctcattctggaaatcaacgacacctgaataggccgttccctcac
ggagaacagcagcaagggaatcatcaactatatttcaaaaataatcagcatcagcagcgt
aactacgaccggaataatcaacggcaatatcattaccatcattactgtcaaggtgtaaac
ggtgtgactggttcgggagagtacgacgagtacgccggtctgatgagcagccgggagaaa
cagtggttaattaatatacaattactgcaactaaacacgaccgaaccttacgtcgacgac
tactactacaccgtgttctgcgatagaaagaacaaacagactttaaatcaagaacaaaaa
gataagaaacgcaataataacaataacaattatcagagagattcgagagatcgagatcaa
ccgcttcctgtgctttcgagacctgcatacataccgatgcagtttgagaactccctgggg
aagttacaattcgcaagcgtaatcgcaccgcgtaaggtgatcgatatggacgttgtgccg
aatggcgatccccaactagcctcgcaaatacagcaaaaggacacgaaacgaacgaggcaa
ttgttgcttgaaatcgaaaggttatatataattcaattgaaactcgaagatctacacaat
cctttagttctacttaatgaacaacaacaacgggaaaatcaggaaggggagaaggaaacg
aataacgagaagaagactaagccagagttaataagtatgatgttatcctctctccttcaa
ttgatacaagacgataaactagcgagtatgctgggtatccgaaaaggaaaaatgctgtta
ttgagatttctgccgtacttgaacgtaacggaatattgtaaccagttagaggaattatgg
aaggcgatattccgaggattaactgtaataggccgtagagattcgcacctgttaacaagc
ctgtattcggagtttcaacgatggttcggtaacatacaagagttcgatacgatacttcga
ctagctcgatcactgtccgatttcactagtcaaccaatcaagaataacaatttagctttc
gccctttcaaacaagttcggtgtgtctgtaatcgcctcgatgttcgaacaagcagagaaa
atatatccgacggacgatgctctgtctgcggaatggtcatcgttcattgcgaatattatc
gatataatcggcgaaactccaccctgtatcgcgccctgtcaaccgatcgctgcggacacg
cttaatcagcatttaaaccgactatctcacttaaagtgcgggaggtacacgactttggaa
cttttattaaccgatatcaactcttcccgataa
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