Ceratina calcarata (carpenter bee): 108627966
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Entry
108627966 CDS
T06061
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108627966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccal03041
]
108627966
Enzymes [BR:
ccal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108627966
Spliceosome [BR:
ccal03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108627966
Complex C
U5 SnRNP specific factors
108627966
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
AAA_19
AAA_16
HTH_61
DEXQc_Suv3
nSTAND3
PhoH
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
108627966
NCBI-ProteinID:
XP_017885073
UniProt:
A0AAJ7J668
LinkDB
All DBs
Position
Unknown
AA seq
2134 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTRMGDRAQRTK
PGKAEERKVKRQKRDEAQYDFARMKGATLLSEGVDEMVGIVYRPKTQETRQTYEVLLSFI
QEALGDQPRDILCGAADEVLAVLKNDRLKEKEKKKETELLLGPLAEERFALLVNLGKKIT
DFGSDEKTTTSEENIDETYGINVQFEESSEEDDEDVYGEVRENDDEGDEGEEANDDRAIH
AENLGGAEEMKKEKPLHPLDIDAYWLQRRLSRIYDDAMVSQARAAEVLAVLKDAGDDRDC
ENQLVLLLGYDCFDFIKQLKKYRHTIAYCTMLASSQSESERQKIRNKMNDDPTLAKILRQ
LDTGKGDDDADETMEARAQRKRREENEDTGGPGGQVQGTRNLIDLEDLVFAQGSHFMANK
RCQLPDGSFRKQRKGYEEVHVPALKPKPFAESEKLLPIDQLPKYVQPAFEGFKTLNRIQS
RLYQAALESDENLLLCAPTGAGKTNVALLCMMREIGKHINADGTINADEFKIIYVAPMRS
LVQEMVGTFSKRLSTYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGEKTFT
SLVRLIIIDEIHLLHDERGPVLEALVARTIRNIETTQEDVRLVGLSATLPNYQDVAAFLR
IKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLVFVH
SRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNQELKDLLPYGFAIHH
AGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELGA
LDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLISKMSDMLNAEIV
LGTIQNIRDAVTWVGYTYLYIRMLRCPNLYSISHDKLKEDPLLELHRADLIHSAAVGLDR
SGLIKYDRKSGNFQATELGRIASHYYCTHETMSIYNQLLKRTLSEIELFRVFSLSSEFKH
INVREEEKLELQKLMERVPIPVKESIEEASAKVNVLLQAYISQLKLEGFALMSDMVFVTQ
SASRLMRAIFEIVLFRGWAQLADKCLSLCKMIDRRMWQSMSPLRQFRKMPEEIVKKIEKK
NFPWERLYDLGPNEIGELIRVPKLGKTIHKYIHQFPKLELSTHIQPITRSTLRVELTITP
DFQWDEKIHGASEAFWILVEDVDSEVILHHEYFLLKAKYATDEHLIKFFVPVFEPLPPQY
FLRVVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQPLPITALRNLKFENLYADKFP
QFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTTIAEFAVLRLLTQNSEGRCVYMVSKEALA
ELVYMDWSTKFNQQLGRKVVLLTGETGTDLKLLAKGQIIITTADKWDVLSRRWKQRKNVQ
NIQLFIVDELQLIGGEEGPVLEVACSRARYISSQLEKPTRIIALSASLADAKDAAQWLGA
PAAATFNFHPSVRPVPLELHVQGINITHNASRLAAMAKPVYNAILRHASHKPVIIFVPTR
RQARLTAIDLLTFTAAEGQASRFFHAEEADIKPFLDRMTDKTLKETLSQGVAYLHEGLSV
DDRRLVEQLFDSGAIQIAVATRDLCWGLSISSHLVVVMDTQCYNGKTHAYEDYPITDVLQ
MVARANRPLEDDDAKCVLLCQSSKKDFFKKFLNEPLPVESHLDHRLHDHFNAEIVTKTIE
NKQDAVDYLTWTFLYRRLTQNPNYYGLQGVTHRHLSDHLSELVESTLSDLEQAKCVAVED
EMDTLPLNLGMIAAYYYINYATIELFSLSLNNKTKIRGLLEIISAAAEYETVPVRQREEN
LLRSLAARLPHAPQAQRMADPHVKAQLLLQAHLSRIQLGPELQKDTELVLSKAIRLIQAC
VDVLSSSGWLAPAVAAMELAQMVTQAMWSKDSYLKQLPHFTADTIKRCTDKGVETVFDVM
ELEDDDRNRLLQLSESQMADVAKFCNRYPNIEMSYEVQDKDKLHSGGTVNVIVQLEREDE
VTGPVVAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPAPGQHSYTL
YFMSDAYLGCDQEYKFTISVEEYESDVSSGSESD
NT seq
6405 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctgcagcaagacaattacaatatgaatataaagcgaattctaatcttgtg
ttacaagctgacgtacgattgatagaaagacgcagcagagatgaagcgactggtgaggtt
atgtcacttgttggcaaactggatggaacgcgtatgggtgacagagcacaacgtactaag
ccaggaaaagcagaggaacgaaaagttaagcgtcaaaagcgggatgaagcacagtacgat
tttgcccgaatgaaaggtgcaacattgctttcagaaggtgtagatgaaatggtaggaatt
gtttatcgtcctaaaacacaggagacacgacaaacttacgaagtattgctgagtttcatt
caagaagccttgggagatcaaccgagagatattttatgtggtgcagcagatgaagtacta
gcagttttaaaaaatgatcgacttaaagaaaaagaaaagaaaaaagaaacagaattattg
ttaggtccattagctgaagaacgatttgcattattagttaatcttgggaagaaaataaca
gactttggaagtgatgagaagactacaacaagtgaggaaaatattgatgaaacgtatgga
ataaatgtacaatttgaagaaagtagtgaagaagatgatgaagatgtttatggagaagtc
agagaaaatgatgatgaaggtgatgaaggtgaagaagctaacgatgacagagctattcat
gctgagaacctaggtggtgcagaagaaatgaaaaaagagaaaccgttacatcctctagat
atagatgcatattggcttcaaaggagattgagcaggatatatgatgatgcaatggtatca
caggcgagagctgcagaagtattagcagttttgaaggacgctggtgatgacagagactgc
gagaaccaattggtacttctgttgggttatgactgttttgatttcatcaagcaactcaag
aagtatagacacacaattgcttattgtactatgttggcctcgtcgcagtctgagtcagaa
cgtcaaaaaattcgaaataaaatgaacgatgaccccacattagcaaagattttgcgacaa
ttagatactggcaaaggtgacgacgatgctgatgaaacaatggaagcaagagcgcaacgt
aaacgaagagaagaaaatgaagataccggaggccctggtggtcaagttcagggcacgaga
aatttaatcgatttagaagatttagtatttgctcagggaagtcatttcatggcgaataag
cgttgtcagttaccggatggtagttttaggaaacaacgtaaagggtacgaggaggtccat
gtacctgccttgaaaccaaagccgtttgcagaaagtgagaaacttcttcccattgaccaa
ctaccaaaatatgttcaaccggcattcgaaggtttcaaaacgttgaaccgaatacagagt
cgtttgtatcaggccgcattagaaagcgatgaaaatttgttactctgcgctccaacaggc
gctggtaaaacaaatgttgctcttttatgtatgatgcgtgaaatcggaaaacatataaac
gcagatggtacaatcaatgcagatgaatttaaaataatctatgtcgcaccaatgcgatca
ttggtacaagaaatggttggcacttttagtaaaagattatccacgtacaacttaacagtg
tcagaattaactggagatcatcagctaacgagggaacaaatagctgcgactcaagttatt
gtctgcactcctgaaaaatgggatattatcacgagaaagggaggagaaaaaacttttact
tcattagtcagattgattattatcgatgaaattcatttactacatgatgagagaggacct
gttttagaggctttagtcgctagaacgattaggaatattgaaacgacgcaagaagatgta
cgtctggtcggtctctcggctacattaccaaattatcaagatgtcgctgcatttttgcga
ataaaacccgaaacaggcctattttactttgacaacagttttagacctgtcgcgctggaa
cagcagtatataggtgtgacagagaagaaagcattgaaacgttttcaagtaatgaacgag
atcgtatacgagaaaacgatggaacatgctggcagaaatcaagttctcgttttcgtgcat
tctcgtaaagaaactgggaaaacagcgcgtgctatcagggatatgtgtttggagaaagat
accttaggacaattcctcagggaaggatcagcatccatggaagtgttaagaacagaagcc
gaacaagttaaaaatcaagaactcaaggacctgttaccatacggttttgccatccatcat
gcgggtatgacgagagtggacagaacgctggtcgaagatctttttgcggatagacacata
caagttttagtatctactgcaactttagcgtggggtgtaaacttaccagcgcatacagtt
attataaaaggtacgcaggtttataatccagaaaaaggtagatgggtcgagttaggcgcc
ctggatgtgttacaaatgttaggtagggcaggtcgtccacaatacgatacaaaaggtgaa
ggtattcttatcacaaaccacagcgaactgcagtattatttgtctcttttaaatcaacaa
ttacctattgaatcgcagttgattagtaaaatgtcagatatgttaaacgcagaaatagtg
ttgggtacgatacaaaatatcagagatgcggtcacttgggtgggatatacttatttgtac
attagaatgcttcgttgtccaaacttgtatagcataagccacgataaactaaaagaagat
ccattactcgaattacatagagcggatcttattcattcggccgcggttggactagatcgg
agcggtttaataaaatatgatcggaaatcgggaaatttccaggccacagaattaggccgt
atagcatcgcattattattgtacacatgaaacaatgtctatatataatcaattgttaaag
cgtactttaagcgagatcgaattgtttagagtattttcattatctagtgaatttaaacat
ataaatgttagggaagaagagaaattagaattacagaagttgatggagagagtaccaatt
ccagtaaaagagagtatagaagaagccagtgcgaaagtcaatgtacttttgcaggcatac
atttctcaattgaaactcgaaggattcgctctaatgtctgacatggtattcgttactcag
tccgcgtcgcgattgatgagagccattttcgaaattgttctattccgtggatgggcacag
ttagcggataaatgtttatccttgtgcaaaatgatagatcgtaggatgtggcagtcaatg
tcgcctcttaggcaattcagaaaaatgccggaagaaattgtgaagaagatcgagaagaaa
aattttccttgggagagattatatgatttgggaccgaatgaaatcggtgaattgattcga
gtaccgaaattaggtaaaactatccataaatatattcatcaatttccaaaattggaattg
tcgacgcatattcaaccgatcacgcgttctactctaagggtagaattaactatcacacca
gattttcagtgggatgagaagatccacggagcatccgaagctttttggatcctagttgaa
gatgtagattccgaggtgatacttcatcatgaatacttcttactcaaagctaaatacgca
acggacgaacatttgatcaaattcttcgtacctgtatttgaaccattgccaccgcaatat
tttttacgcgtagtatccgacagatggatcggtgcagagactcaattacctgttagtttt
cggcatctgattttgccagagaagaatttaccaccaactgaattgctcgatttgcaaccg
cttccaattaccgccttgcgtaacttgaaattcgaaaatctttacgcagacaaatttcca
caattcaatccaattcagacgcaagtgtttaacgctgtttataattcagacgacaatgta
ttcgttggagcacccacaggttctggcaagacaacgatcgctgaattcgctgttttacgt
ttattaactcaaaactcagaaggaagatgcgtatacatggtcagtaaggaagctttagca
gaattggtttacatggattggtccacgaaattcaaccaacaattgggtagaaaagtcgtt
ctactgaccggtgagaccggaacggatctcaaattactcgcgaagggacaaatcataatt
acaacggcggataagtgggacgtattgtcacgaagatggaaacaaaggaaaaatgtacag
aatattcaactttttattgtagatgaacttcagttgatcggtggtgaagaagggcctgtg
ctagaagtcgcttgctcgagagcgcggtatatctcttcacagttggagaaaccaaccaga
atcatagcattgtcagcatcattagcggatgcgaaggatgctgcacagtggttgggcgca
cctgctgctgcaacatttaatttccatccatctgtaagacctgtacccctcgaattacac
gtgcaagggataaatattactcacaatgcctctagattagctgctatggcaaaaccagtt
tacaacgcgatactcaggcatgcctcccataagccagttatcattttcgttcctacccgt
cgtcaagcaagattaacagcaatagatttgcttacgtttactgcagccgaaggtcaggca
tctcgattctttcacgcggaagaagctgatattaagccattcctggatagaatgacggat
aaaacattgaaagagacactttcgcaaggtgttgcttatcttcatgagggattgtccgtg
gacgatcgacgtcttgtcgaacaactcttcgatagtggtgctattcaaatagcagtggct
acgagagatctttgttggggtttatctattagctctcatcttgttgttgtcatggatact
cagtgttacaatgggaaaacacatgcttacgaggattaccctattacggatgttttacaa
atggtagcgcgagcgaatcgtccattagaagatgatgatgctaaatgtgttctactttgt
cagagctcaaagaaggacttcttcaagaaatttctgaacgagccgttacccgtcgaaagc
catttggatcacagattacacgatcattttaatgccgagatcgttactaaaacgattgag
aataaacaggatgctgttgactacctcacgtggactttcttgtataggcggcttacgcaa
aatccgaattattacggattgcaaggcgtaactcacaggcatttatcagatcatttgtcc
gagttagttgagagtactttgagcgatttggaacaagcgaaatgcgtcgctgtagaagac
gagatggatactctacctctgaaccttggaatgatcgcggcgtactattatatcaattac
gcaactattgaattgtttagtctctccttaaacaataaaacaaaaatcagaggtttactg
gagatcatttcggcagctgccgaatacgaaactgtgcccgttcggcaacgggaagaaaat
ttgttaaggagtttggcagcgcgattgccgcacgcgcctcaagcacagcgaatggcagat
cctcacgtgaaagcgcagctcttgctacaagctcacttgtctaggatacagcttggtccg
gaacttcaaaaagatacggaactggtgttgagcaaagccatccgactgatacaggcttgt
gttgatgtccttagctcgtccggttggttggcccccgctgtcgctgctatggaactggcg
cagatggttactcaagcaatgtggtcaaaggactcttatcttaaacagttgccacatttc
acagctgatactatcaaacgttgcacagacaagggtgtggaaactgtcttcgatgtaatg
gagttggaggacgacgatagaaatcgtcttttacaattatccgagtcgcaaatggctgat
gtagctaagttttgtaatcgttatcctaatatagagatgtcttatgaagttcaagataaa
gataagttacacagcggtggaactgttaacgttattgtacagcttgagagggaagacgaa
gtcacgggcccggtcgtagcaccgtttttcccgcaaaaaagagaggaaggatggtgggtt
gttatcggagatccgaaaaccaactccttgctgtctattaagagattaacgctacagcaa
aaggcgaaagtgaaactcgattttgtagcgcccgctcctggacagcattcttatactttg
tattttatgagcgatgcctatttaggttgtgaccaagagtataaatttactatcagtgtt
gaagaatatgaatcggacgttagttcaggatcagaatcagattaa
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integrated database retrieval system
