Ceratina calcarata (carpenter bee): 108628061
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Entry
108628061 CDS
T06061
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108628061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccal03041
]
108628061
Spliceosome [BR:
ccal03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108628061
Complex C
U5 SnRNP specific factors
108628061
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
108628061
NCBI-ProteinID:
XP_017885227
UniProt:
A0AAJ7J5J6
LinkDB
All DBs
Position
Unknown
AA seq
2374 aa
AA seq
DB search
MSIPPYLLGPNPWATMMAQQQAHAQLAAAQAHAQAAAQAQAAHHAHMQAISGPPLPQMPK
QPEVLSEDKLQEKAQKWQQLQSKRFAEKRKFGFVDAQKEDMPPEHIRKIIRDHGDMSSRK
YRHDKRVYLGALKYMPHAVMKLLENMPMPWEQIRDVKVLYHITGAITFVNEIPWVIEPVY
IAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNVLDVEPLEAIQIELDSEED
ESVASWFYEHKPLVGTKHVNGSTYRRWNLTLPQMATLYRLANQLLTDLVDQNFFYLFDPK
SFFTAKALNMAIPGGPKFEPLVKDSNAADEDWNEFNDINKIIIRQPIRTEYRIAFPYLYN
NMPHFVHLSWYHAPNVVYIKTEDPDLPAFYFDPLINPISHRNSLKTMEPQIDDDEDFVLP
EEVQPFLQETPLYTDNTANGIALLWAPRPFNTRSGRTRRAIDIPLVKSWYREHCPPGQPV
KVRVSYQKLLKYFVLNALKHRHPKPQKKRYLFRSFKSTKFFQTTTIDWVEAGLQVCRQGY
NMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLIIDSH
VQYRLNNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPV
GKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHF
DLELRASVMHDIVDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPIPIENMILR
YVKMKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYI
SPEEAVAIYTTTVHWLESRRFAPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQR
EELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLIPVYDVEPLEKITDAY
LDQYLWYEADKRRLFPPWVKPSDTEPPPLLVYKWCQGINNLQDVWDVSEGECNVLLESKF
EKLYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIA
QYYGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDVASETAHPIRLYCRYVDRIHLFLRF
SADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRL
PRSTTTIQWENSFVSVYSKDNPNLLFNMSGFECRILPKCRTTHEEFTHRDGVWNLQNEIT
KERTAQCFLRVDDESLQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNT
QELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLR
WSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNR
RLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHD
GKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNA
QRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHL
WQKVHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFSAYKWNVSR
PSLLADSKDLMDNTTTQKYWIDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGL
LIAIDLAYNLHSAYGNWFPGCKPLIQQAMAKIMKANPALYVLRERIRKALQLYSSEPTEP
YLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKI
IHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPN
IVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILR
ALHVNTERTKVVLKPDKTTITEPHHIWPSLTDDEWIKVEVQLKDLILADYGKKNNVNVAS
LTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITATTSN
YETQTFSSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLR
AQIAGYLYGISPPDNPQVKEIRCIVMAPQWGTHQTVHLPNTLPNHQYLKEMEPLGWIHTQ
PNELPQLSPQDISTHARIMAENPIWDGEKTIVITCSFTPGSCSLTAYKLTPSGFEWGKQN
TDKGNNPKGYLPSHYEKVQMLLSDRFLGFFMVPSQGSWNYNFMGVRHDPNMKYELQLANP
KEFYHEIHRPAHFLNFSSLEDGEGVGADREDVFA
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgtcgataccaccgtatttattgggcccaaacccatgggccactatgatggcccaacag
caagctcatgctcagctagcagcggctcaggctcacgctcaagcagcagcacaggcacaa
gccgctcaccatgcccacatgcaagctatatctggaccgcccttaccacaaatgcccaaa
caacctgaagttttatcagaggataagcttcaggaaaaagctcaaaaatggcagcaactc
cagtcgaagagatttgccgagaaaagaaaatttggtttcgtcgacgctcagaaggaagac
atgcctcctgagcacattagaaaaattattagagatcatggagatatgagcagtcgtaaa
tacagacatgacaaacgtgtctacctaggggcgttgaagtatatgccacacgcggtaatg
aaactgttagaaaacatgcctatgccttgggaacagattcgagacgtaaaagttctgtac
cacataacgggtgcaattacttttgtgaatgaaattccttgggtcatagaacctgtatat
atcgctcagtggggtacgatgtggattatgatgcgaagagaaaaacgagaccgtaggcat
ttcaagaggatgagatttccaccgttcgacgacgaagaacctccgttggattacgcggat
aacgtgttggacgtagaacctttggaagctattcagatcgagctcgattcagaggaagat
gaatccgtagcatcgtggttttacgaacacaaaccgcttgttggtacaaagcatgttaat
ggatctacttaccgaaggtggaacctaacattgccacaaatggcaactttatatcgcctg
gctaatcaattgttaacggacctggtggatcagaacttcttctacctcttcgatccgaaa
tcatttttcactgcgaaagcattaaacatggctataccgggcggaccgaaattcgaacca
ctcgtaaaggactcgaatgcagctgacgaagattggaacgagttcaacgacattaataaa
attatcattaggcagcccataagaacggaatatcgcatcgcgtttccttatttgtacaac
aacatgccgcacttcgtacatttatcatggtaccacgcgccgaatgtagtttatattaaa
accgaagatcctgacttacctgcgttttatttcgatccattgatcaatcctatttctcac
agaaattctctgaagacgatggaaccacaaattgatgacgatgaagatttcgtcctgccc
gaggaagtacaaccctttcttcaagaaactcctttatacactgacaatactgcgaacggt
atagccctgctgtgggcaccaagaccgttcaacactcgttcaggtagaacgcgcagagcc
atcgatattcctttggtgaaatcgtggtatagagagcattgcccgccagggcaacccgtc
aaagttcgtgtcagttaccaaaagctgttgaagtacttcgttctaaacgcgttgaagcac
agacacccaaaaccgcaaaagaaacgttatctattccgatcattcaaatcgaccaagttc
ttccaaacgactacgatagactgggtcgaagcaggtctacaagtatgcagacaaggatac
aacatgttgaatctgcttattcacagaaagaacttgaactatcttcacttggattacaac
ttcaatctaaaaccggttaaaacgctaacgacgaaggagaggaagaaatccagattcgga
aacgcgtttcatttgtgccgtgagattctccgtttgacaaaattgataatcgattctcac
gtgcaatatcgtttgaacaacgtcgacgcgttccaactagcggacgggctgcaatatatc
ttcgcgcacgttggccagttgactggaatgtatcgatacaaatacaaactgatgcggcag
atcagaatgtgcaaagatctgaaacacttgatttactaccgattcaatacaggtcctgtt
gggaagggtcccggttgtggattctgggcacccggatggagagtctggctcttcttcatg
agaggaatcactccattattagaacgatggctaggaaatctgttgtcgaggcagttcgag
ggtcgtcattccaagggtgtcgcaaagaccgtaacgaagcagcgagtggaatcgcatttc
gatcttgagttacgagcatccgtgatgcacgacatcgttgacatgatgccagaaggaatc
aaacagaacaaagctcggacgattcttcaacatttgagcgaggcgtggaggtgttggaaa
gctaatatcccttggaaagttcccggactaccaataccgattgaaaacatgatcctccgt
tatgtgaagatgaaagcagattggtggaccaacacagcgcactataatcgagaaagaatt
aggcgcggagcgacggtggacaagactgtttgcaagaagaatcttggacgtctaacacgg
ctgtaccttaaggctgaacaagaaagacagcacaattacttgaaggatggtccctacatt
tcaccggaggaagcagtcgctatttacaccacaactgtacattggctagaatcaaggaga
ttcgctcctatacctttcccaccgttgtcttacaagcacgataccaagctgctgatatta
gctctggaacgattgaaggaagcttatagcgtgaagtcgagattgaatcaaagccagcgc
gaggaacttggtttgattgaacaagcgtacgacaatcctcatgaagcgctatccagaatt
aagcgtcatcttttaactcaaagagctttcaaggaagtaggaatagagttcatggatctt
tacagtcatctgattcctgtctacgacgtcgaaccgcttgagaaaattacagatgcgtac
ctggatcaatacttgtggtacgaagcggacaaacgaagattgtttccaccgtgggtgaag
ccatcggacacggaaccgccacctcttttagtatataaatggtgtcagggtatcaataat
ctgcaagatgtttgggacgtcagcgaaggagagtgcaacgtgctattggaatcaaaattc
gagaagttgtacgaaaagattgatttaacattgctgaatagacttctccgattgatcgtt
gatcacaatatagcagattacatgacagctaaaaataacgttgtcataaattacaaggat
atgaaccatacgaacagttatggtataattagagggttgcagttcgcatcgttcatagcg
cagtattatggcttggtgctcgatttgctagttctcgggttgcaacgtgccagtgaaatg
gccggtcctcctcaaatgccgaatgactttttaactttccaggacgtcgcttcggaaact
gcgcatcctatcagattgtattgcagatacgtcgacagaatacatctgttcttaagattc
tcagcggacgaggcgagagacttgattcaacgatacttgacggagcatccagacccgaac
aatgagaatatcgttgggtacaataacaaaaaatgctggcccagagatgccaggatgcgt
ctgatgaagcacgacgttaatctaggccgcgccgttttctgggacattaaaaaccgtttg
ccccgttcgacgactaccatacaatgggagaacagtttcgtcagcgtttacagtaaagac
aatccgaatttgttgttcaacatgagcggattcgagtgcagaattttaccgaaatgtagg
acgacccatgaagaattcacgcacagggacggagtgtggaacttgcagaatgaaatcacg
aaagaaagaaccgcccagtgtttcttgcgagtggacgacgagagtctacaacgattccac
aacagagtcagacagattctaatggcatccgggtctacgacgttcacaaaaattgttaac
aaatggaataccgctttgatcggtctgatgacctacttccgcgaagctgtcgtgaatacg
caggagcttttggatctgttagtgaaatgcgagaataaaatacaaacacgtatcaagatc
ggtctcaattcgaaaatgccctcgcgattcccgccggtggtgttttacacgccgaaggaa
ttgggcgggcttggaatgctttcgatgggacacgtgctcatacctcaatcagacttgaga
tggtccaagcaaacggatgtcggcatcacgcatttccgttcgggcatgagtcacgacgag
gatcagttgattcctaacttgtatcgttacatacaaccgtgggaatccgagttcatagac
tcgcaacgagtatgggcggagtatgcgttgaaaaggcaggaggcaaatgcacaaaatcgt
agattgactttagaggatctggaagacagctgggatcgaggtatccctaggataaataca
ctgttccaaaaagatagacacactctggcctacgacaagggatggagaatacggacagaa
tttaaacagtaccaagtattgaaacagaatcccttctggtggactcatcaacgtcacgat
ggtaaattgtggaacttgaacaattatagaacggacatgattcaagctctgggtggtgtg
gagggtattctggagcacactctcttcaaaggaacgtacttccctacgtgggaaggtctt
ttctgggagaaagcgtccgggttcgaggaatctatgaagtataaaaaattgaccaacgct
cagaggtccggtttgaaccaaattccgaatcgtcggttcactttatggtggtcgccgacc
attaacagggcgaacgtgtacgttggtttccaggtccaattagatttaacaggaatattc
atgcacggtaaaattcctacgctgaagatctctctgattcaaattttccgtgcgcattta
tggcagaaggtgcacgagtcgatcgtgatggatctctgtcaagtgttcgatcaggaatta
gacgcgttggaaatcgaaactgttcagaaggagactatccatcctcgaaaatcgtacaag
atgaattcctcctgcgcagatattttactgttctccgcgtacaagtggaacgtttcgagg
ccctcgttgctcgccgattcgaaggacttgatggataatactaccacacagaaatattgg
atagacgtccaactcagatggggagattacgattcgcacgatatagaaagatacgccaga
gcgaaattcttagattatacgacggacaacatgtccatttatccgtcgcctacaggatta
ctaatagccatcgatttagcttataatttacacagtgcgtacggtaactggttcccagga
tgcaagcctctcatacagcaagcaatggccaagataatgaaagcgaatccagctctgtac
gtgttaagagaaagaattaggaaggcgttgcaattatattcgtcagagcccacggaaccg
tatttatcttcgcaaaattatggagaattattctcgaatcaaattatctggttcgtcgac
gacacaaacgtctatcgcgtcactattcacaaaacattcgagggaaatttaacgacgaag
cctataaacggagcaatatttattttcaatccccgaacagggcaactgtttctgaaaatt
attcacacttccgtctgggccggacagaagcgtttaggacaattggcaaagtggaaaacg
gctgaggaagtagccgcgttgattaggtctctgcccgttgaagaacaacccaaacaaatt
atagtaaccagaaagggaatgttggatccattggaagtgcatctactcgactttcctaac
atcgtgatcaaaggatcagaacttcagctacccttccaagcttgtctgaaggtagagaag
tttggcgatttgatattgaaagcgacagagcctcaaatggtgttgttcaacttgtacgat
gactggttgaaaactatctcttcgtacactgcattctcacgtttgatcctcatccttcga
gcgttgcatgttaataccgaaaggacaaaagtcgttttgaaacccgacaagacgaccata
acggaaccccatcatatctggccttcgctgacggacgacgaatggatcaaagttgaagta
caattaaaggatttaatcttggctgattatggtaaaaagaacaatgtgaatgtcgcgtcg
ttgactcaatctgagatccgggacataatcctgggtatggaaatcagtgcgccgtccgcg
cagcgacagcagatcgctgagatagagaagcaaacgaaagagcagtcgcagctgacagcg
acgacaacgaggacggtcaacaaacacggcgacgagattatcacagccacgacttcgaat
tacgagacgcagacgttcagttcaaagaccgagtggcgagtgagagcgatttctgctacc
aatctacacttgcgtaccaatcatatatacgtgtcgtccgacgatatcaaagagaccggt
tacacgtacattttgccgaagaacgtgctcaaaaaatttgttactatatcggatttgcgg
gcgcagatcgcgggatatttgtacggcattagtccaccggacaatccgcaagtgaaggaa
attaggtgcatagttatggcaccgcagtggggaactcatcagacggttcatttaccaaac
acgcttcctaatcaccagtatctgaaagaaatggagcccctaggatggattcatacgcaa
ccaaacgagctacctcaactgtctccgcaggatatatctacccacgcccggataatggca
gagaatccgatttgggatggagagaagactatcgtcattacttgcagtttcacgccagga
tcctgctctcttacggcatacaaattaacacccagtggttttgaatgggggaagcaaaat
accgacaaaggaaataatcccaaaggctacctaccgagtcattacgagaaagtacaaatg
ttgttatccgaccgtttcctcggatttttcatggtaccgagtcaaggttcctggaactac
aacttcatgggtgtcaggcacgatccgaatatgaaatacgaactgcagctggcgaatccg
aaggagttctatcacgagatccacagacctgcacactttttaaatttctcgagtttagag
gatggagaaggtgtcggtgctgatagagaagacgtgttcgcataa
DBGET
integrated database retrieval system
