Ceratina calcarata (carpenter bee): 108628072
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Entry
108628072 CDS
T06061
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5 isoform X2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108628072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccal03019
]
108628072
Messenger RNA biogenesis [BR:
ccal03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
108628072
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
108628072
NCBI-ProteinID:
XP_017885244
UniProt:
A0AAJ7NAQ0
LinkDB
All DBs
Position
Unknown
AA seq
230 aa
AA seq
DB search
MAMATTQIKREGSGWPRRASNSSFEGKVVANQSVTINRTVNLYPLTNYTFGTKEPLFEKD
PSVPARFQRMRDEFDKIGMRRSVEGVLLVHEHGLPHVLLLQLGTTFFKLPGGELNTGEDE
VEGLKRLLTETFGRQEGVKQEWVIEDTIGNWWRPNFEPPQYPYVPPHITKPKEHKRLFLV
QLQEKALFAVPKNYKLVAAPLFELYDNSQGYGPIISSLPQSLCRFNFIYM
NT seq
693 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggcaacaactcaaataaagagggaaggaagtgggtggccaagaagagcgagt
aacagttcgttcgagggaaaagtggtggcgaaccagtctgtaactatcaacaggacagtt
aatttatatcctttgacaaactatacattcggaacaaaagagccactcttcgagaaagat
ccgtctgtaccagcaaggtttcagcgtatgcgagacgaatttgataaaattggaatgcgc
cgcagcgtcgaaggggttttgttggtgcacgaacacggactgccacacgttctccttctt
caactgggaactacattcttcaaattacctggtggagaactaaatacaggagaagacgag
gtagagggcctaaaacggctccttacagagacgtttgggcgccaggagggagttaaacag
gaatgggtgatagaagacaccattggaaactggtggagacctaactttgaaccaccccaa
tatccgtacgtaccgccacacatcaccaaaccaaaagaacacaaaaggttgttcctcgtc
cagttgcaagagaaagccctgttcgcagtacctaagaattataaattggtagctgcgccc
ttgttcgagttatatgacaattcacaaggatacggacccattatttcttccctaccacag
tcactttgcagatttaattttatctatatgtga
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