Ceratina calcarata (carpenter bee): 108628557
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Entry
108628557 CDS
T06061
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108628557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccal03041
]
108628557
Enzymes [BR:
ccal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108628557
Spliceosome [BR:
ccal03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108628557
Complex B
108628557
Complex C
U2 SnRNP specific factors
108628557
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
MscL
Cas3-like_C_2
NHase_beta_N
Motif
Other DBs
NCBI-GeneID:
108628557
NCBI-ProteinID:
XP_017886041
UniProt:
A0AAJ7WDK6
LinkDB
All DBs
Position
Unknown
AA seq
778 aa
AA seq
DB search
MSYHRGGGNKPKGFGFAGFQMTGTKRAGSNIPPPPPNSTLSKQGYHTMNSITENALSACW
GMPKKRSKTEEEYFEDDDDPPPFSLEYIPAPGSPTNDWMKKSAPKVDSDSEEDPLDAFMA
GIDAEVKKNTYESQLAEDERKEEKTKGFRADIDGEDDEESYYRYMEENPTAGLLQEESDQ
EIEYDEDGNPIAPPKKKDIDPLPPIDHSEIQYEPFEKNFYNVHDEIASLSKQQIDDLRKT
LGIKVSGPSPPNPVTSFAHFGFDDPLIKAIRKNEYTQPTPIQAQAVPAALSGRDIIGIAK
TGSGKTAAFIWPMLVHIMDQRELKAGDGPIGLILAPTRELSQQIYQEARKFGKVYNIQVC
CCYGGGSKWEQSKALEGGAEIVVATPGRMIDLVKMKATNLTRVSFLVLDEADRMFDMGFE
PQVRSICNHVRPDRQTLLFSATFKKRVEKLARDVLTDPVRIVQGDVGEANTDVTQHVIVF
NNNPTGKWTWLLQNLVEFLSAGSLLIFVTKKLNAEELANNLKLKEFDVMLLHGDMDQLGR
NKVITAFKKKEVSTLVATDVAARGLDIPHIRTVVNYDVARDIDTHTHRIGRTGRAGEKGT
AYTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQSAWFRKSRFKGGKGKSLNVGGAG
LGFRGRPEASSASSTSSSGGSSSQGSKDISEVVKKLERHGPGSDRLSAMKAAFRSQYNSQ
FRASSDHTWEQTITRPSVIMPPPPPVPPKPNTEQSKTQENQASNTGGERKRVRKSRWE
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgagttaccatcgtggagggggaaataagccaaaaggctttgggtttgctggctttcaa
atgactggtacaaagagagctggttctaatataccaccacctccaccaaattctacccta
agtaaacagggatatcatactatgaattctatcactgagaatgccttatctgcatgttgg
ggaatgccaaaaaagcgtagtaaaactgaagaagaatattttgaggatgacgatgatcct
ccaccattttccttggagtatatcccagcacctggatcaccaacaaatgattggatgaag
aaatcagcacctaaagtggatagcgatagcgaagaggatcccctggatgcgtttatggct
ggcatagatgcagaagttaaaaagaatacctatgaatcacaacttgctgaagatgaacga
aaagaagaaaagactaagggattcagagcggatattgatggcgaagacgacgaagagagt
tattataggtacatggaagagaatccaactgcgggtttgctacaagaggaatctgaccaa
gaaatcgaatacgacgaggatggcaatcctattgcacctccgaaaaagaaagatattgat
ccgttgccacctatagaccatagcgagatacaatacgagccgttcgagaaaaacttttat
aacgttcacgatgagattgctagtttaagtaaacaacagatcgatgatttgagaaaaact
ttgggaattaaagtgtccggcccgtcacctcctaatccagttactagtttcgctcatttc
ggttttgacgatccgttaataaaagcaattagaaaaaatgagtacacgcaaccgacacct
attcaagctcaagctgttcctgctgcgttgagcggcagggatataataggtatagcaaaa
accggaagcggtaaaacggcagccttcatttggccgatgttggttcatattatggatcaa
agagaattaaaagcaggcgacgggcctatcggtttaattcttgccccgacacgagaatta
tctcaacagatttatcaagaagcgagaaagtttggcaaagtgtataatattcaagtgtgt
tgctgctacggcggtggcagtaaatgggaacaaagtaaagcattggaaggaggtgcagaa
atagtagtcgcaacaccaggcagaatgatagatttagttaaaatgaaagcgacaaatttg
actagagtatcttttctagtattggacgaagctgataggatgtttgatatgggtttcgag
ccgcaagtgcgttctatatgcaaccacgtaaggccagacaggcaaacgttgttgttcagc
gcaacttttaaaaagagggtagagaaactagccagggatgttttaacggatccggttaga
atagtccaaggggacgtcggtgaagccaacaccgatgtcactcagcacgtgatagtattt
aataataatccaaccgggaaatggacttggctattacaaaacttagttgaatttttaagc
gctggtagcttgttaatattcgtaaccaaaaagctcaatgcggaagaactcgctaacaat
cttaaattaaaagaattcgatgtaatgcttttacacggtgacatggatcaacttggaaga
aacaaagtaataactgcttttaagaaaaaggaagtcagtactttggttgctactgacgtt
gccgctcgaggcttagacattccacatatcagaactgtcgttaattatgatgtcgcgcga
gatatcgacactcatactcacaggataggtagaacaggtcgagctggcgagaaaggtaca
gcatatacccttgtcacagaaaaagacaaagagttcgcaggccacctagttcgaaatttg
gaaggtgcgaatcaagaagtaccaaagagtcttatggatctagcaatgcaaagtgcttgg
ttccggaaatcacgattcaaaggcggaaaaggcaagagtttgaatgtcggaggagctgga
cttggttttaggggaagaccagaagcttcctcggcttcctcgacgtcctcgagcggtggt
tcctcatcgcaaggatcgaaagatataagcgaggttgtcaaaaagttagaaagacacggg
cctggtagcgatcgattatcagctatgaaagccgcgtttcgcagtcagtacaattctcag
tttcgggcatcatcggatcacacgtgggagcaaactatcacgcggccttcggtaataatg
ccaccaccaccacctgtacccccgaaaccaaatacagaacaatcgaagactcaggaaaat
caagcctcgaatacgggaggggaaagaaagcgagtgagaaagagtcgatgggaataa
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