Ceratina calcarata (carpenter bee): 108629027
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Entry
108629027 CDS
T06061
Name
(RefSeq) cleavage and polyadenylation specificity factor 73
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108629027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccal03021
]
108629027
03019 Messenger RNA biogenesis [BR:
ccal03019
]
108629027
Transcription machinery [BR:
ccal03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108629027
Messenger RNA biogenesis [BR:
ccal03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108629027
U7-dependent histone pre-mRNA processing factors
108629027
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Gp58
Motif
Other DBs
NCBI-GeneID:
108629027
NCBI-ProteinID:
XP_026672639
UniProt:
A0AAJ7WDY0
LinkDB
All DBs
Position
Unknown
AA seq
686 aa
AA seq
DB search
MSVKRKPETQIPAEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDAL
PFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKV
SNIATEQMLYTESDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVK
ILYTGDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRG
GRCLIPVFALGRAQELLLILDEYWSQHPELHEIPIYYASSLAKKCMAVYQTYVNAMNDKI
RRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVI
IAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRILKPPH
VVLVHGEQNEMGRLKAALQREYEDDPNTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAME
TPKTGQTLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQRQSVHFSAALPVLKHLLTQI
AGNLEMIDDKKLRIFKNVDVTIDGKIVTIEWIATPVNDMYADSVLTAILQAEMMEQLPKV
LPAPTKMDRMHFKECLIEMLQEMFGEDSVPKIFKGEKLYVTVDGKKAHIDLLNLEVTCKE
DETFQQIVQTAVTKLHQSLAPPCDTI
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgaaaaggaagcctgagacacaaatcccagccgaagagagtgacctattatca
attaggccacttggagctggccaagaagtaggcagatcatgcatcatgctagaattcaaa
ggaaagaagataatgttagattgtggcattcatcctggcttatctggcatggacgcactg
ccatttgtggatttagtagaagcagatgagattgatctgctactgatttctcattttcat
ttggatcattgcggagctttgccttggttcttgcaaaagacaagtttcaagggaagatgc
ttcatgactcatgccaccaaagctatttatcgctggctcttgtctgattacatcaaagta
agcaacattgcaacagagcaaatgttgtatactgaatctgatctggagacaagcatggat
aaaatagaaactatcaacttccatgaagaaaaagatgtctttggaatcaaattttgggcc
tacaatgctggccatgtgttaggagctgctatgtttatgatagaaatagcgggtgttaag
attttgtatactggagacttcagtcgtcaagaggacaggcatttgatggctgcagaaatt
ccgaatattcatccggacgttttaatcactgaatctacctacgggacgcacatacatgaa
aagagagaagatcgtgaaggaagattcacaaatttagtccatgaaattgttaacaggggt
gggaggtgcttaataccagtgttcgcattaggtagagcacaagaacttctccttatttta
gatgaatactggagccagcatccagaacttcatgaaattcccatatattatgcttcctca
ttagcgaagaagtgcatggccgtttatcaaacttacgtgaacgcgatgaacgacaagatt
agaagacagatagctattaacaatcctttcgtgtttaaacatatctcgaatctgaaagga
atcgatcattttgaagatattgggccatgtgtagtgatggcttctccaggtatgatgcaa
agcggtttatcgcgagaattattcgaatcttggtgcactgatgctaaaaatggagtcata
attgctggttactgcgtggaaggaacactagcgaaaactattttatcggaacctgaagag
attacaacgatgagtggtcagaagttaccactgaagatgtccgtcgattatatatcattc
tcagcgcatacagactatcaacaaacatcagaattcatacgtattttgaaaccacctcat
gttgtactcgtacatggagaacaaaatgaaatgggaagattgaaagccgctttacaaagg
gaatacgaagacgatccgaacacaacgatggagatacacaatcctagaaatacagttgcc
gtagaactgtattttagaggagagaaaacagcaaaagtaatgggaacgttggcgatggaa
acaccaaaaactggtcaaacattatctggagttttagttaagaggaacttcaattaccac
atgctggcaccttgcgatttatccaagtatacagatatgagcatgagccaagttattcaa
aggcagagcgtgcatttttcagcagcgttgccagtattaaaacatcttctgacacaaatc
gccggaaatctggagatgatagatgacaagaagctacgtatttttaagaacgtcgatgtc
accattgatgggaaaattgtaactatcgaatggattgcaacgcctgtaaacgacatgtat
gcagactccgttttgaccgcgatactgcaagccgaaatgatggaacagctaccgaaagta
ctgcctgcgcccacgaaaatggacaggatgcatttcaaagagtgcttgatagaaatgctt
caagaaatgtttggagaggattctgttcccaagattttcaaaggggagaaactatatgtg
acagttgatgggaagaaagcacatatagatttgttaaatttggaagtaacttgtaaagag
gatgagacttttcaacaaatagtacaaactgcagtaacgaaattacatcagtcacttgca
cctccctgtgatacaatctaa
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