Ceratina calcarata (carpenter bee): 108629070
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Entry
108629070 CDS
T06061
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X2
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108629070
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccal00536
]
108629070
Glycosaminoglycan binding proteins [BR:
ccal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108629070
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
108629070
NCBI-ProteinID:
XP_017886929
UniProt:
A0AAJ7J914
LinkDB
All DBs
Position
Unknown
AA seq
1806 aa
AA seq
DB search
MRPDHVKQQWRTLRLPRKIHSVSWAFYLLVILGSYPVLADITLRNIERNVVDLVDGTGMQ
QEPVGVQIIENRCHRNDTVAYDIAESALLTINTYTLFPSGIPRDFSILVVAKPKVGYPAA
TLFAIYSDSGEEQLVLSLGSDITLYYSTTPDDEDRSIPFGIDISDGNWHRFGISIKGNTA
TLILDCDKQISKELRRNMDETISVNGIILIGQQIVDGNMYLGGLETLKIAPIPDAAYEIC
KIFAPDCRNQTKFKFGRNSYSNTWNYDLAARITSSTYYEGATSTDSSQTVRGPRYGDVPT
SRSYYETNYDTLNSSRSRSRTPTLPRSNTLDNAQDENFIKETEEDYEEGEDTLTEVSESN
NLTYRPTIPTYTLKPSIETLLHNQSAIFNNVGSPTVSQYQTTSPEASEAYENLIGENKGE
LKYLESSEGSYYSTAYYNTRGPPGPRGFPGPPGVPGPPGEKGEPGRDGLAGLQGVPGSPG
NVFIIPSLNQQGNEKGPDTQAEALRQMLSQHMMAMRGAEGPMGLTGIPGPEGPPGPQGQK
GEPGEIGEPGSRGERGIPGNTGREGRRGRPGRDGERGLSGPPGMKGEQGLPGLPGLPGDK
GERGPPGVTGEQGLPGHEGMQGDDGPPGLPGLPGEMGPRGFIGPRGFPGLPGNPGIPGSE
GPPGAKGNTGPPGPSGQPGPSGPIGPVGPPGPQGLLGPTGLVGPQGKPGIPGLPGADGSP
GHPGNPGGPGMKGEQGPQGPQGPVGFPGVRGVKGDEGKRGLPGERGEKGDRGPEGEKGDL
GSKGEPGSPGPQGIPGLEGLEGPKGFEGQRGESGSIGPPGEKGKTGSPGFIGYPGNFGEK
GEKGQPGREGPSGDKGERGNNGVSGERGEPGPRGFRGARGRRGAEGLPGPKGDTGQPGPQ
GLQGEPGPPGIEGPRGFVGSPGQAGLDGKDGIPGPPGERGPVGDSGSPGPSGTPGVIGPQ
GPAGEPGQPGEPGSPGNPGTPGETGPPGEQGKEGSPGPVGLPGKEGPPGPGGLPGFPGER
GLSGLPGMPGTKGEVGPPGLQGPPGDKGAQGESGIDGEPGPQGSKGPKGPPGAVGLKGDR
GEPGPAGSTGRDGLPGQRGLPGSPGPVGVPGEDGDKGEIGPPGEKGFKGSQGEMGPPGSP
GIQGIRGEPGTIGLPGEKGPPGEIGRQGPKGEDGPVGAPGPSGPVGPQGMPGPPGLKGEM
GDVGAVGPVGPAGSPGEQGPRGYKGSEGLPGLPGPEGRQGAKGEAGAPGLPGPMGPEGKL
GERGPPGPKGEEGKSGPPGPPGSRGINGPEGPKGSVGPPGFPGPPGEPGLIGLKGEPGRD
GEDGKSGDPGPPGETGPPGKEGLPGSPGKQGSEGPAGVQGSPGPPGEKGDVGPSGAPGPQ
GALGPQGFPGPTGLPGMRGLPGLAGENGPPGMPGAVGAPGKAGPVGPKGPKGDRGKRGLK
GHRGELGQVGLKGEQGEKGEQGPRGAPGPEGPKGDQGPSGLMGFKGNDGPPGLPGMEGPT
GPKGNSGNDGPKGETGPPGPPGPPGPPAEQPMIPPELLFTREQILRKRRDTSDDIDGDDK
EKENSESSVKKEKIEEELGPKFLDMYSSIYAMRQELDRIRKPIGSRENPARTCKDLFYGH
PQFQNGWHWIDPNLGMPDDAVYVYCNMTNMGETCVFPDTHTSQMPNIPWRKEDNKTDWYS
NLRGGFKITYETIGVVQLNFLRLLSQEASQNFTYTCINGVAWYDALNSDYDSSLRLLGAN
EDEFSHTGIKPQIVADNCKMRKNKGETVLLIQSRKLDQLPLVDFYPVDYGSPHQAFGFTV
GPICFK
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atgcggccggaccacgtgaagcagcaatggagaacactgcgactgcctcgcaagattcac
tccgtttcttgggcattttacctccttgttatattgggatcgtatccggtattagccgac
ataactttgcgaaacatcgaaagaaatgtcgtggatttggtggacggtaccggaatgcaa
caggaaccagtcggggtgcaaataatcgagaatcgttgtcacagaaatgacacggtcgct
tatgatatcgcggaaagtgcgttattgacgatcaatacgtacactctatttccttctggc
ataccacgagatttttcaatcttagtcgtcgccaaaccaaaagttggatacccggctgcc
acgttatttgctatctatagcgatagtggtgaggaacagttggtgctatcgttgggcagt
gacatcactctttactatagcaccactccggatgatgaggaccgatccataccatttgga
attgatatatctgatgggaactggcaccgtttcgggatcagtattaagggcaacacagcc
actttaattcttgactgtgacaaacagatttctaaagaattgcgtagaaatatggacgaa
acaataagcgtcaatggtatcatactcataggtcaacaaatagtcgatggtaatatgtat
ctgggcggcttagaaacattgaagatcgctccaattccggatgcagcgtatgaaatttgc
aagattttcgctccagattgtagaaatcaaacgaaatttaaatttggacgtaatagttat
tcgaatacttggaattatgacctcgcggcacgtatcacttcgtcgacttattacgagggt
gcgacgagtactgatagcagtcagacggtcagaggtcctcgttacggagacgtaccgacc
agtagatcgtattacgaaacaaactatgacaccttgaattcgtctaggagtcgtagtaga
acacctacgttacctcgttcaaatactttggacaatgcacaggacgaaaatttcataaag
gaaacggaagaagattacgaggagggtgaagacacgctaaccgaagttagcgagagtaac
aatttaacttatagacccacgattccaacgtacacgttaaagccaagtatagaaacgttg
cttcataatcaaagcgcaatttttaacaacgtcggttcacctacggtgagtcagtatcaa
acgacaagtccagaagcgtccgaggcatatgaaaacttaatcggggaaaacaaaggggag
ttgaaatatctcgagtcttccgagggatcgtattacagcaccgcttattataataccagg
ggtccaccgggtccgcgcggatttccgggacctccaggcgtgcctgggccgcccggtgaa
aaaggagaaccaggcagagacgggttggcaggtttacaaggcgtgcctggttcaccgggt
aacgtgttcataataccgtcgttgaatcaacaaggaaatgagaaggggccggatacacaa
gcggaagctttaaggcaaatgctttcgcagcacatgatggccatgagaggtgccgaaggt
ccgatgggtttgacaggtattccgggacccgaaggacctccaggacctcaaggccagaaa
ggagagccgggagaaatcggcgagccaggatcgcgcggtgaaagaggaatacctggaaac
actggtagagaaggcaggcgaggacgacctggaagggacggagaacgaggtttaagtgga
ccacctggaatgaaaggtgaacaaggtttaccgggactgcctggactgccaggagataag
ggcgaaagaggaccaccgggtgttactggtgaacagggtttaccaggtcatgaagggatg
caaggtgacgatggacctccaggtttaccaggtttacctggtgaaatggggcctcgagga
ttcataggaccgcgaggttttcctggattacctggcaatcctggtattcctggaagcgaa
ggtcctccgggagcaaaaggcaatactggtccgccaggcccgtcaggccaaccaggtcca
tctggaccgatcgggcctgtaggtccacctgggcctcaaggtcttttaggaccaactggt
ttagtcggaccacaaggaaaaccgggaattcccggtctgccaggagcggatggatcccct
ggtcatccgggaaacccaggtggtcctggcatgaaaggtgaacaaggaccacagggacca
caaggtccagtaggtttcccgggagtccgcggtgtgaagggcgatgaaggtaaacgtgga
ctgcctggtgaacgaggcgagaagggagatagaggaccagagggagagaaaggtgatcta
ggctcaaagggagagcctggatcgccaggtccgcaaggaattcctggcttggaaggcttg
gaaggtccgaagggtttcgaaggtcagcgtggtgaaagtggatcgataggtccacctggt
gaaaagggtaaaactggatcaccgggtttcatcggatatccgggtaattttggtgaaaaa
ggtgaaaaaggtcaaccgggaagggaagggcctagcggagataaaggggagaggggtaat
aatggtgtatcaggcgaacgtggcgaaccagggcccagaggatttagaggagctcgtgga
agacgaggtgccgagggattgccagggccaaagggtgacaccggacagccaggtccgcaa
ggattgcaaggagaacctggaccgccagggatcgaaggtccgcgcggattcgtaggatct
cccgggcaagctggtctcgacggaaaagatggaattcctggtcctcccggagaacgtgga
ccagtgggcgattccggatcacctggaccttcgggcacacctggtgttatcggtccgcaa
ggtccggccggtgaaccgggtcaaccgggagagcctgggagtccaggaaatccaggaact
ccaggagaaacaggccctcctggagagcaaggaaaggaaggatcgccgggaccagttggt
cttcctggaaaggaaggaccgccaggacctggtggattgccaggatttcctggcgaacga
ggactaagtggtttacctggaatgcccggtacaaaaggtgaagtaggaccaccaggactt
caaggtccaccaggtgacaaaggtgctcaaggagaatctggaatagacggagaaccgggt
cctcagggaagtaaaggaccaaaaggaccacccggagcagttggtttgaaaggcgacagg
ggtgaacctggtccggcaggctctactggacgagacggattaccaggacaacgtggattg
ccaggatctcccggtcctgtcggcgttccaggagaagatggagacaaaggagagattggt
ccgcccggtgagaaaggattcaaaggatctcaaggagaaatgggtcctccaggatcaccg
ggaatacaaggaattcgtggtgaacctggtaccatcggtttaccaggtgaaaagggacca
cctggagaaatcggaaggcaaggaccaaaaggtgaggatggtcctgtcggtgcaccagga
ccttctggtcctgtggggccgcaaggaatgcctggccctccgggattgaaaggagaaatg
ggagacgtcggtgcagttggtccagtaggaccagctggaagtccaggtgaacaaggtccg
agaggatacaagggatccgaaggtttaccaggacttccaggaccagaaggtcgacaaggc
gcaaagggagaagccggtgccccaggactcccgggtccgatgggtcctgaaggaaagctg
ggtgaaaggggtcctccaggcccgaaaggagaagaaggaaaaagtggtcctccgggaccg
cctggtagccgtggtataaacggtccggaaggaccgaagggcagcgtgggacctcctggt
tttcctggacctcccggagaaccaggtttgatcggattaaaaggggaacctggaagagat
ggagaagatgggaaatctggtgatcctggaccaccgggagagacaggtcctccgggaaaa
gaaggattacctggatcccctgggaaacaaggatccgagggtccggctggagtacaagga
agcccagggcctccaggagaaaaaggagatgttggtccgtctggagcaccgggtcctcaa
ggtgctctaggccctcaaggatttccgggaccaactggtctgccaggtatgagaggactc
ccaggacttgccggtgaaaatgggccaccgggaatgccaggcgctgtcggtgctccaggg
aaagctggaccggtcggaccaaaaggaccaaagggcgacagaggcaaacgaggactcaag
gggcatcgaggtgaattaggtcaggttggattaaaaggcgaacaaggtgaaaaaggagaa
cagggaccgcgaggtgctcctggacctgaagggccgaagggcgatcagggaccgtcgggt
ttaatgggattcaagggaaacgatggaccaccaggacttcctggaatggaaggaccgacg
ggacctaaaggaaatagtggcaacgacggtccaaaaggtgaaacgggtcctccagggcct
ccaggtcctcctggaccacctgcggaacaaccgatgattcctcctgaattattgttcacc
agggagcaaattttgcggaagagacgcgacacttcggacgacatagacggtgatgataag
gaaaaagaaaattcagaaagttcggtcaagaaggagaaaatagaagaggagcttgggccg
aaattcttagacatgtacagttcgatatacgctatgagacaggaactggatcgaatacgt
aaaccgattggaagccgagaaaatccggcgaggacttgcaaagatctattttacggtcac
ccacagtttcagaacggatggcattggatcgatccgaacttgggaatgcctgacgacgca
gtgtacgtttattgcaacatgacgaacatgggcgaaacttgcgtatttccagacacccat
acgagtcaaatgccaaacataccatggaggaaggaagacaataaaacagattggtattcg
aacctacgcggtggattcaagattacgtacgagactataggagtcgtgcagttgaacttc
ttgcgtttactgagtcaagaggccagtcaaaattttacgtacacctgtatcaacggtgtt
gcttggtacgacgcgctgaactctgactacgattcttctttacggctattaggcgcaaac
gaggacgaattttcgcacaccggtatcaagccgcaaatcgtagccgacaattgtaaaatg
cggaagaacaaaggagagacggtgctgttgattcaaagtagaaagttggatcaattaccg
ctggttgatttttatccggtcgactacggatcgcctcatcaggcgtttggcttcacggtg
ggaccgatttgtttcaaatag
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integrated database retrieval system
