Ceratina calcarata (carpenter bee): 108629361
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Entry
108629361 CDS
T06061
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03020
RNA polymerase
ccal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108629361
09124 Replication and repair
03420 Nucleotide excision repair
108629361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccal03021
]
108629361
03400 DNA repair and recombination proteins [BR:
ccal03400
]
108629361
Enzymes [BR:
ccal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108629361
Transcription machinery [BR:
ccal03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108629361
DNA repair and recombination proteins [BR:
ccal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108629361
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
108629361
NCBI-ProteinID:
XP_017887471
UniProt:
A0AAJ7J8K8
LinkDB
All DBs
Position
Unknown
AA seq
1175 aa
AA seq
DB search
MYSLEDDQYEDEDAEEISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVE
DSPQIDLQAEAQHTSGEIENPVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWINMM
AKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFCETK
KAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQ
KFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDIIVSE
VSMIRDIRDREIRIYTDAGRISRPLLIVENQTLLLKKRHIDMLKERDYNNDGWQELVGSG
VVEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSI
VAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQG
MRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDELDSTTKRFTKRDASTFLRNS
ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCE
GLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKISTLLQEYG
YQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA
RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFECKG
CKNKTQISQIRLPYAAKLLFQELMAMNIAPRLMVA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtactccttggaggacgatcaatatgaagacgaagatgcggaggaaatttcgtcgaag
ctttggcaggaggcttgctggattgttattaatgcttacttcgacgaaaaaggtcttgta
agacagcaacttgacagcttcgatgaattcattgaaatgtcggttcagagaattgtagaa
gactcgccgcaaatcgatttacaagcagaggcacaacatacctctggggaaatagaaaat
cctgtcaggcatctgttgaagtttgaacaaatctatttatccaagcctacccattgggaa
aaggacggagcaccttctcctatgatgcctaacgaagcgagacttagaaatttaacgtac
tcagcaccactgtacgtagacatcactaagacaattgtgaaagatggggaagacccaatt
gagacgcaacatcaaaaaacgttcataggaaaaataccgattatgttaagatcaaagtat
tgtctacttgctggtctgtctgatcgtgatttaactgaattgaatgagtgtccgctcgat
cctggcggttacttcatcattaatggctcagaaaaagtacttattgcacaagagaagatg
gcaacgaatacagtttatgttttcagtatgaaagacggtaagtacgcgtacaaatcggaa
atcagatcttgtttggaacatagttcaagacccacgtccacgttatggattaacatgatg
gcaaaaagtggagccagtattaaaaagtctgccataggtcagcgtataattgcaatcatt
ccatacataaaacaggagattcctattatgattgtatttcgagcacttggatttgtcgct
gatcgagatattttggagcacatcatatatgattttgatgaccctgaaatgatggaaatg
gtgaagccttctttggacgaagcgtttgtgatacaagagcaaaatgttgctctgaatttc
atcggtaccaggggcgcgagacccggtgtgactaaagaaaaacgtattaagtatgctcga
gaaattctacagaaggaaatgctcccacacgtaggcataagcgacttctgtgaaactaag
aaagcttatttccttggctacatggtgcaccgattgctgtcagcctccttaggtagaagg
gaactcgacgatcgagatcattacggtaataaacgattggatctagccggaccgttatta
gcattcctatttagaggactgttcaaaaatttgatgaaagaagtcaggctgtacgctcag
aaattcatagacaggggcaaagatttcaatctcgagcttgctattaaaacgaagataatt
accgatggtttgagatactcgctcgccacgggtaattggggcgatcaaaagaaggctcac
caagctagagccggtgtctcgcaagtgttaaacaggctaacatttgcctcgacgctttca
catttacgaagagtgaactccccgattggaagagacgggaaattggcgaaacctcgtcaa
ttacacaacacgttatggggaatgttgtgtcccgccgaaacacccgaaggcgcagctgta
ggactggtcaagaatttggcattgatggcttacatcagcgtcggatctcaaccgtctccg
attctcgaattcttggaggaatggtcgatggagaacttagaggaaatcgcgccaagcgcc
atagccgatgctacgaaaatattcgtaaacggctgctgggtcggtattcacagggatccg
gatcaattgatggctactttacgtaaactgagaagacaaatggacatcatcgtatcggaa
gtatctatgataagagatatcagagatcgtgaaatcaggatatacactgatgcaggaaga
atcagtaggcctttgttaatcgtcgaaaaccagacgttattattgaagaaaagacacatc
gacatgttgaaagaaagagattacaataacgacggatggcaggaattagttggtagcgga
gtcgtggaatacattgacaccttggaagaagaaacagtcatgatcgcgatgtcacccgaa
gacttgaggcaagagaaagaatacgcttattgtacgacgtacacgcactgcgagattcat
ccagctatgatcttaggcgtgtgtgcctccattataccatttccagatcacaatcaaagt
ccaagaaatacttatcaaagcgctatgggcaaacaagccatgggtgtctacattacgaac
tttcacgttcggatggacactttggcgcacgtactgtattatccccacaaacctctggtg
accacaagatctatggaatatcttagattccgtgaattaccagctggaatcaacagtata
gtcgctatattatgttatactggctacaaccaggaagacagcgttatcctgaatgccagc
gccgttgaacgaggtttcttcagatccgtgttctacagatcttataaagactcggaatcg
aagaggatcggagatcaagaagaacagttcgagaaacctacgcgacagacttgtcaagga
atgcgcaacgccatttacgataaactggacgatgatgggatcattgctcctggaattcgt
gtatccggagacgacgttgtcataggtaaaactattactctaccagaagcggacgacgaa
ttggacagtacgacgaaacgttttacgaagagagacgcgtcgacctttttacggaacagc
gaaactggcatcgtcgatcaggtgatgctgactttgaacagcgaagggtacaagttttgt
aaaattcgagtgcgcagcgttcgtataccgcagatcggtgacaaattcgcttcgcggcac
gggcaaaagggtacgtgcggtatacaatacaggcaagaggacatgccgttctcgtgcgag
ggtctcacgccagacataatcatcaatccccacgctattccgtctcgtatgaccatcggt
cacttgatcgagtgtatacaagggaaggtgtccgcgaataaaggtgagatcggtgacgct
actccgtttaacgacgccgtgaacgtacaaaagatctccacgctccttcaagaatatgga
tatcaattgagagggaacgaagttatgtataatggtcacaccggtcgcaaaataaacgct
caagtatttttggggccaacttattatcagcggctgaagcatatggtggatgataagata
cacagcagagctaggggaccggtacaaattttagtaaggcaaccgatggagggaagggcg
agagacggaggtttgcgtttcggtgaaatggaacgggattgccaaatttctcacggggcc
gcgcaatttttaagggaacgcttgttcgaagtctccgatccgtatagaatacacatatgt
aacttctgtggtttaattgcaatagcgaacttaagaaataacacgttcgagtgtaaagga
tgcaagaacaaaacgcagatatctcaaattcgattaccgtacgcggcgaaattacttttc
caagagcttatggccatgaatattgccccccgattaatggtagcataa
DBGET
integrated database retrieval system
