Ceratina calcarata (carpenter bee): 108630326
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Entry
108630326 CDS
T06061
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108630326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccal03400
]
108630326
DNA repair and recombination proteins [BR:
ccal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108630326
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
CRISPR_Cas2
Motif
Other DBs
NCBI-GeneID:
108630326
NCBI-ProteinID:
XP_017889034
UniProt:
A0AAJ7JAW5
LinkDB
All DBs
Position
Unknown
AA seq
919 aa
AA seq
DB search
MAVQPNQQFNMDPPTQVGFVKFFRNMPEKLNTTIRFFNRLDYYTLHGSDALFAAQEVFNT
TSVCKIIGEGSQKIEGVILNKNHFESFIRDLLLVKQYRVEVYANQGTSRDHNWVLQYKGS
PGNLVHFEDILFGNNDVSVSVRVIAVRLGMEGKHRIVGLSCVDTTANSFSVCEFKDNESF
SDLESLVVTLAPKECLLIHGEGSYEFETLKQVMERNNVLVTTRRKSEFSSESVIQDLNTL
IKFNKSQQPNAQCLPEAHLDFAMSAISALIKYLDLTSEEGNLNQFSIDQIQQSRYLKLDS
AAIKALNIEPCGDNTSILCESTPASILTLLDKCRTPQGHRLLAQWIRQPLKDLSLIKERH
DIVEELVNCNELRSNLNNDYLKRMLDFEVFAKKLARKKATLQDCYKIYMCVSELPGLLEQ
FSNTDIVAMKTMITDPLKDIIKNIDKFQQMIEHTIDLEAAERGDFLVKAEFGDNLKDLKD
TMVKIEKKLQSVSRKVADDLSLEHGKSLKLESNPQFGYHFRVTMKEEEALRNKNKYSILD
SNKSGVRFQTDQLNDLNNEYTSVKSKYMAEQKKVVADVIEIAATYTSQIKIAGNIIAYLD
VLTAFATAAVSANKQYIRPEMLPSESGVFHLTQVRHPCLEGQEGIDYIANDVNFKRGDNH
FSIITGPNMGGKSTYIRSIGIAALMAHIGSFVPCDNAKISLLDSILSRVGADDSQLKGLS
TFMMEMMETTSVLKSATCNSLVLIDELGRGTSTYEGCGIAWSIAEYLAKKVKCFCLFATH
FHEITRLEEEIPGVRNEHVTALVDDDKLTLLYKVKPGICDQSFGIHIAKMAGLPQDVIEF
AKRKQEELEYYQNSVFEGSDNPYKKRKIIKEAEVLISEFIDKCKNLDKSLSDSELERKVS
IFKEEVLSHKNPYALLAAS
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atggctgttcaaccaaaccaacaatttaatatggatccaccaacacaagttggttttgtt
aaattttttcggaacatgccagaaaaactgaatactactatccgattcttcaatagattg
gactattacacgctacatggtagtgacgcattatttgctgctcaggaagttttcaatacc
acttctgtgtgtaaaataataggagaaggttcacaaaaaattgagggtgtaatacttaat
aaaaatcattttgagtctttcatacgtgatttattattagtaaaacaatacagagtagaa
gtgtatgctaatcaaggaacaagtagagatcataattgggtattgcagtataaaggatca
cctggaaatctggtacattttgaagatatactttttggcaataatgatgtttctgttagt
gtacgcgtgatagcagtaagattgggaatggaagggaaacatagaatcgtcggtttgagt
tgtgtagatactacagcaaattcattctctgtttgtgagtttaaagataatgaatcattc
tcggatttggagtcacttgttgttacacttgctcctaaagaatgtttgttgattcatggt
gaagggagttatgagtttgaaactctaaagcaagtcatggagagaaataatgttctggtt
actacaagaaggaaaagtgaattttccagtgaatctgttatacaagatttgaatacttta
attaaattcaataaatctcaacaaccaaatgcgcaatgtcttcccgaagctcatttagat
tttgcaatgtcagctatctctgctcttatcaaatatttagatttaacgtcggaagaggga
aacttgaatcaatttagcatagaccaaatacagcagtcacgttatctgaaattggattca
gcagctataaaagcacttaacattgaaccttgtggtgataacacttccattttgtgtgaa
agtacacctgcaagtattttgacgcttttagataaatgtcgcacacctcaaggacacagg
cttcttgctcaatggattagacaacctttgaaagatttatctcttataaaagaacgacac
gatattgttgaagaattagtaaactgtaatgaattaagatcaaatctcaacaatgattat
ttaaaacgcatgcttgactttgaagtatttgcgaaaaaattggcgagaaagaaagcaacc
ttgcaagattgttataagatttatatgtgtgtgtcagagttacctggattacttgaacaa
ttttccaacacagatatagtagctatgaagacaatgatcactgatcctttaaaagacatt
atcaaaaacatagacaaatttcagcaaatgattgaacatacaattgatttagaagctgct
gagagaggagatttcctagtaaaagctgaatttggtgataatttaaaagatttgaaagat
actatggtaaaaatagagaagaaattacagtcagtatcgcgtaaagtcgccgacgatctt
tctctcgaacatggtaaatcgctaaaattagaatcgaatccgcaatttggctatcatttc
cgcgtgacaatgaaagaagaagaggcattgagaaataaaaataaatactctattttggat
tccaataaaagtggcgtgcgatttcaaactgatcaactaaatgatctgaataacgagtac
acttctgtcaaaagtaaatacatggcagagcaaaaaaaagttgttgcagatgtaatagaa
attgcagctacttatactagccagataaaaatagctggaaacataattgcctatcttgac
gtgcttactgcctttgcaactgccgctgtaagtgccaacaaacagtatattcgtcctgaa
atgttacctagcgaatcaggcgtatttcatcttacccaagttcgacatccatgtttggaa
ggtcaggaaggaatagattatatagccaacgatgttaattttaaaagaggagataaccat
ttttctataataactggtccaaatatgggaggtaaaagtacatatataagatccattggg
attgctgctttaatggcacatattggtagttttgttccttgtgacaatgcaaaaatatca
ctattagattccatattatcccgtgtaggggcagatgattcacaattaaaaggtctctct
acatttatgatggaaatgatggaaactacgtctgtattaaaatcagcaacatgcaattct
ctcgtattgattgatgaactaggcaggggaacgtctacgtacgaaggttgtggtatagct
tggtcaattgcggagtatttggcgaagaaagttaaatgtttttgcttgtttgcgacacat
ttccatgaaataactagactagaagaagaaatacctggcgtcaggaatgaacatgtgact
gctctcgttgatgatgataaattaacattgttatataaagtaaaaccgggtatatgcgat
caaagttttggaattcatattgctaaaatggctggcttgccgcaagatgtgatagagttc
gctaagcgtaagcaagaagaacttgaatattaccaaaattcagtttttgaagggtctgac
aatccatataaaaaacgaaaaattatcaaggaagctgaagttcttatttcggaatttatt
gacaagtgtaagaatttagataaatcattatctgattctgagttagaacgaaaagtttca
atatttaaagaagaagttttgtcacacaaaaatccttacgctctccttgcagcctcataa
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