Ceratina calcarata (carpenter bee): 108631203
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Entry
108631203 CDS
T06061
Name
(RefSeq) ATP-dependent RNA helicase p62-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108631203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccal03041
]
108631203
03009 Ribosome biogenesis [BR:
ccal03009
]
108631203
Enzymes [BR:
ccal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108631203
Spliceosome [BR:
ccal03041
]
Complex A
U1 snRNP components
U1 related factors
108631203
Complex B
108631203
Ribosome biogenesis [BR:
ccal03009
]
Eukaryotic type
Pre-60S particles
Helicases
108631203
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_30
ERCC3_RAD25_C
DUF2095
Motif
Other DBs
NCBI-GeneID:
108631203
NCBI-ProteinID:
XP_017890435
UniProt:
A0AAJ7JE26
LinkDB
All DBs
Position
Unknown
AA seq
540 aa
AA seq
DB search
MLHHVMRAIGSLEIRTYGASYHSSGNYRSVKPRPSSQYGNPNANRTGRPFQNHSKSNING
TAGNLKKPNWSFENLKPFKKDFYIPHPNVQSRHPQEIDVFRQENQITLKGEKIPNPIQHF
EEGNFPDHVMQCIRKQGFSEPTAIQAQGWPIAMSGQNMVGIAQTGSGKTLGYILPAIVHI
SSQQPLNRGDGPIALILAPTRELAQQIQKVTYNFGYVRSTCIFGGAPKGSQARDLEQGVE
ICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWS
ATWPKEVRNLAEEYLVDYTQLNIGSLTLSANHNILQIVDVCEEHEKQSKLENLLQEIGNI
NPEGGKTIVFVETKKKVESITRTIRRYGWPAVCIHGDKSQLERDYVLAEFRKNRDAILVA
TDVAARGLDVDDVKYVINFDYPTSSEDYIHRIGRTGRSNNSGTSYAFFTPQNGRQAKGLV
NVLKEAKQVINPKLMELADKTGNDMSRNRWGYGGGNYRRRDNVFPKSQHKRFDNANYFDA
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaccatgtaatgagagctattggatccctcgaaattaggacgtacggagcaagt
taccacagcagtggaaattataggagtgtcaagccgaggccatcgtctcaatatggaaac
cctaacgccaacagaaccggtagaccgtttcaaaatcatagcaagagtaacatcaacggt
actgccggtaacttgaagaaaccgaattggagcttcgagaatttgaaacccttcaagaaa
gatttttatataccgcacccgaacgttcagtcgcgtcacccgcaagagatagacgtgttt
aggcaagaaaatcagatcactctgaagggcgagaaaattcctaatcccattcaacacttc
gaggaaggcaacttccctgatcacgtgatgcaatgcatacggaagcaagggttcagcgaa
ccgaccgctattcaagctcaaggatggccgatcgctatgtccgggcagaacatggtgggg
atagcgcagaccggatctggaaaaactttgggatacattttacccgcgatagtccacatc
agcagtcagcagccgttgaatcgtggagacggaccgatcgctttgattctggccccgacc
agagaattggcgcaacagatccaaaaagttacatacaacttcggctatgtgaggagtacc
tgtatcttcggtggcgcaccgaaaggaagccaggctcgcgatttggaacaaggagtcgag
atctgtatcgctacgcctggacggctgatcgactttttggaacgcggtacgaccaattta
cgtagatgcacgtatctggtgctggacgaagcggacaggatgctcgacatgggcttcgaa
cctcagatcagaaagatcatcgaacagatcagacccgacagacaagtgctgatgtggtct
gcgacgtggccgaaggaggttcgaaacctcgcggaagaatatctcgtggattatactcag
ctgaacattgggtcgttgacgttgtcggctaatcacaacattctgcagatcgtagacgtt
tgcgaggaacatgagaaacagtccaaattggaaaatctacttcaggaaattggtaatatt
aatccagagggtgggaagacgatagtttttgtagagacaaagaaaaaggtggaaagtatt
acccgaactattcgtcgttatggctggcctgcagtatgtatacacggcgacaagtcgcaa
ttggaaagagactatgttcttgcagaatttaggaagaacagagacgcgatccttgtagca
acagacgttgctgcacgtggtttagatgtcgacgatgtaaaatacgtgatcaacttcgat
tacccgacttcgtccgaagactacattcacagaatcggtagaaccggtcgttcaaataat
tccgggacgagctatgcgttctttacgccccaaaacggacgtcaagccaaaggattggtt
aatgtacttaaggaagccaaacaagttattaatccaaagttaatggaactcgcggacaag
actggaaacgacatgtcaagaaatcgctggggatacggaggaggaaattaccgcagacga
gataatgttttccccaagtcgcagcataaacgattcgacaatgcgaattacttcgacgcg
tag
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