Ceratina calcarata (carpenter bee): 108631268
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Entry
108631268 CDS
T06061
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03013
Nucleocytoplasmic transport
ccal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108631268
03015 mRNA surveillance pathway
108631268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccal03019
]
108631268
Enzymes [BR:
ccal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108631268
5.6.2.5 RNA 5'-3' helicase
108631268
Messenger RNA biogenesis [BR:
ccal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108631268
mRNA cycle factors
Common to processing body (P body) and stress granule
108631268
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
ATPase
NPHP3_N
SRP54
AAA_16
AAA_22
nSTAND3
AAA_10
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
108631268
NCBI-ProteinID:
XP_026674518
UniProt:
A0AAJ7WGH7
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDAGQSQPSQ
PVQVNGTSGSSSLDLKISGAAQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGAQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGAAPSK
NKQGGPRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAV
GEFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcgtacgggcccagcagtcagaccctgacgttcctcgacaccgaggaa
gcagacttgatcggcgcggacacgcagggtagcgagttcgacttcaccgatttcacgtta
ccgtcgccgagtcaaactcaggcctcgcaacacgatgctggccaaagccaacctagccaa
cccgtgcaggtcaacgggacgagcgggagttcgtctctggacttgaagatctccggagcg
gcgcagagccttgccgagttacagttcgaggaagaagaggaggaagcttactacaatcgt
gacctacccgaacatgcatgtaaatactgcggtatccacgaagcgtcctgcgtcgttatg
tgtaacgtctgccgcaaatggttttgcaacgggcgtggaaacacgtccggttcccatatc
atcaaccatctcgtccgggccaagcataaggaagtcacgttgcacagagatggtcctctg
ggagagactgttttggagtgttactcttgtgctgttaggaatgtttttgttctcggtttc
attcctgccaaggcagattcggtcgtcgtgttactctgtcgccaaccctgcgcggctcag
agttccctgaaagacatgaactgggatcaggaacaatggaagccattgatcgaagaccgt
tcgtttctggcgtggcttgtgaagatcccgtctgagcaggaacagctgcgcgccaggcaa
atttccgcgcagcagattaacaaactggaagaattgtggcgggacaacgtcgacgcgacc
ttccaagacctcgagaagcccggcgtggacgaagaaccgcagcaagtgcttctgcggtac
gaggatggataccagtaccaaaacatatttggtccgctcgttaaattagaagccgattac
gacaaacgtttgaaggagtctcagacgcaagagaacatcgaagtccgttgggacgttggt
ctgaataaaaagacgatcgcctatttcatgttggctaagacggacggcgacatgaaattg
atgcacggcgacgagctcaggctccgttatctgggcgagcttcacaagccctggtccggg
atcggccacgtgatcaagatccccgacaactacggggaggaggtgggaatcgaattgaag
aacaactccggggcgccgaccgagtgcgtcagtaacttcgtcgtcgatttcatttggaag
agtacgagcttcgaccgaatgcagttagcgttgcgtaaattcgccgtggacgacacttcc
gtgtccggctatatttatcacagactgttggggcacgaggtggaggaagttctgtttcgc
tgtcacctgcccaagcacttcagcgcgccgaacctgcccgacttgaaccggtcccaggtg
tacgccgtgaaacacgccgtacagaggcccttgtctctgatccaaggcccgcccggcacg
gggaagaccgtcaccagtgccacgatagtttatcagctggtgaaacagaacggcggcccc
gttctggtgtgcgcgccttcgaacacggccgtggaccagctcacggagaagatacacaag
tcgaatctgaaggtcgtacgactctgcgcgaaatcccgagaagcgatcgactcgccggtc
agcttcctcgctcttcacaatcagatcaagaacatggagacgaacaccgagctacagaag
ttgcagcagctgaaagacgagaccggggaactgtccagcgtggacgagaaacgttacagg
ctgttgaagaaggcggcggagaaggaactgctggaggccgccgacgtgatctgttgcacg
tgcgtcggcgccggtgatcccagattgcacaggctcaagttccattcgattctcatcgac
gagagcatgcaggccaccgagcccgagtgcatggtgccggtcgtcctcggggcgaagcag
ttgatcctcgtcggcgatcactgtcagctgggtccggtggtgatgtgcaagaaggctgcc
agggcaggtttgtcgcagtctctcttcgagagactggtcgttctcggcatcagaccgttc
agattggaagtgcaataccgtatgcacccggatctctcgcgtttcccctcgaacttcttc
tacgaaggctcgctgcagaacggcgtgtgcgccgacgagaggaagctgttgaagatcgac
tttccttggccagcccccgacaagccgatgttcttctatgttacccagggacaggaggaa
atcgccggcagcggcacgtcgtacctgaatcgaacggaggcgtcgaacgtcgagaagata
gcgaccagattcttacgctgcggcgtgaagcccgagcagatcggagtgataaccccctac
gaaggtcagagagcttatctggttcagtacatgcagtatcagggatccctgcactcgaaa
ctttatcaggagatcgaggtagccagcgtggacgcgttccaaggcagggagaaagacata
ataatcatgtcgtgcgtacgatcgaacgagcatcagggtatcgggttcctgaacgatccc
cgcaggttgaacgtcgcgttgacccgcgcaaaatatgggataatcatcgtgggcaatccg
aaggtgctgtcgaagcagccgctgtggaaccacctgttgagcttctacaaagaacagaag
gtcctcgtcgagggaccgctgaacaatctcaaggaatcgatgatccagttcgcgaaacca
aagaagctcgtgaacgccgctaacccgggctcccatttcatgtcgacctcgatgtacgac
gcgagagaggctctgattccgggatcggtctacgaccggtccggtgctcaagtgaacggg
acgcagaatcacaatccttactatcagagaaacgtgcctttggacatattcagcaggacc
cacgacactatcagctacatcagcccggaaagagcgcaggcggcgatgaacaacgtgccg
gtccccgtggggatgttcatgaacatggcccacgtgccgccccgtttctacaaccagcac
cagcaggcgttgcaggctagacagaatcaacggaatcgcaggggagccgccccgtcgaag
aacaagcagggtggcccgcgcatgggcaagctgagccaaacggagcagaacacccagccg
tatagccagcccggcttgccgttgacccagggcaccacgcaaggcatgtcccagccaggt
ttcagtctatcccagcccggtctgagtcaggcggagctttctcaggactcgttcgctgtc
ggggagtttcaatcgcagatggacggtttgttgtcgcaggactcgacgtaccagggcgat
cgaagtggtttctatcagtccggacagtcacaagccgggggacagttctcccagccatac
tga
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