Ceratina calcarata (carpenter bee): 108632267
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Entry
108632267 CDS
T06061
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108632267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccal03021
]
108632267
03019 Messenger RNA biogenesis [BR:
ccal03019
]
108632267
Transcription machinery [BR:
ccal03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
108632267
RNA polymerase I system
108632267
Messenger RNA biogenesis [BR:
ccal03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
108632267
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW7_SPT5
KOW2_Spt5
KOW
KOW6_SPT5
Spt5-NGN
KOW5_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
CTD
GPKOW_C
SH3_KIN17_C
Motif
Other DBs
NCBI-GeneID:
108632267
NCBI-ProteinID:
XP_017892203
UniProt:
A0AAJ7NF77
LinkDB
All DBs
Position
Unknown
AA seq
1132 aa
AA seq
DB search
MSDSEASNLSENERDRGGGGSESEQEENRSMKSVGGSDGGSIGDRSHRVSRSRSGSRSRS
RSPTRWRSRSRSASGSEDGRGDEAEEARSGDEEMEPEEEPEGEDLDGSSEFDEEEEEEDD
DRPRKKKKKDKYRDFIIDEAEVDDEVEDDDEWEEGAQEIGIVGNEVDELGPTAREIEGRR
RGTNLWDSQKEDEIEEYLRKKYADESLATRHFGDGGEEMSDEITQQTLLPGVKDPNLWMV
KCRIGEEKATVLLLMRKFITYQFSNEPLQIKSVVAPEGVKGYIYIEAYKQPHVKAAIENV
GNLRMGIWKQQMVPIKEMTDVLRVVKEQTGLKAKQWVRLKRGIYKDDIAQVDYVDLAQNQ
VHLKLLPRIDYTRPRGALRTAQSESEALKRKKKRRPPAKPFDPEAIRAIGGEVTSDGDFL
IFEGNRYSRKGFLYKNFTTSAIIAEGVKPTLSELERFEEAPEGVELDLSGTPSTGIGNKE
DAAVTHSFSTGDNVEVCEGELINLQGKIVSIDGNMIMVMPKHEELKEALEFQASELRKYF
TMGDHVKVVAGRYEGDTGLIVRVEQNRVVLFSDLSMHELEVLPRDLQLCSDMATGVDSLG
QFQWGDLVQLDAQTVGVIVRLERENFHVLSMHGKVIEARPQGLTKRRENRNAVALDSQQN
TIQKKDIVKVVDGPHAGRGGEIKHLYRSFAFLHSRMFVDNGGIFVCKTRHLQLSGGNKSN
ISSMLPVAGFMSPRIASPMHPSGGGFARGGGGRGRGRGGGARRDRELIGTTIKITGGPYK
GNVGIVKDATDTTARVELHSTCQTISVDRSHIANVAVLTKDGGFSSYNRTPAYPGGQTPM
YARDGSKTPMHGSQTPMYENGSRTPHYGSMTPSHDGSRTPGQSGAWDPTVTNTPARTNDF
DGYSMEESGSPGYAPGYPSTGGPFTPQTPGTMYGSEQSFSSYQPSPSPAGSASASPSPAG
YVATPSPSGTGYTTSPHGAFATPSPMGYSPMTPGVAGSPYNPQTPGAGLDTSVGSGIIGG
TEWHTTDIEVRIRDSHQDPALAGQQGIIRGISGGMCAVFLPVEDRVVNLVCEDLEPVVPS
RGDRVKVIMGEDREAVGTLLSIDNQEGVVKLNKDEVKMLHLRFLCKMKPANA
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattcggaggcgagcaatctttctgagaatgaaagggatcgcggcggtggcggc
agtgaaagtgaacaagaagagaatcgttcgatgaaatctgttggcggcagcgatggtgga
agtatcggcgacagatcgcatcgtgtttcccgaagcagaagcggctcgagatcgcgatca
agaagtccgaccaggtggaggtcaagatctcgatcagcgtccggttctgaggatggcaga
ggagacgaagcagaggaagctaggtctggagacgaggaaatggaacctgaggaagaacct
gaaggagaggatttggacggaagtagcgagttcgatgaggaagaagaagaggaagacgat
gacaggcctaggaagaaaaagaagaaggacaaatatcgtgatttcatcatagatgaagct
gaggtagacgacgaagtcgaggatgatgatgagtgggaagaaggtgcccaagaaattggt
atagttgggaacgaagtggacgagttgggcccaactgctagggaaatcgagggtcgacgc
agaggaaccaatctctgggattctcagaaggaagatgaaatagaggagtacctgaggaag
aagtatgcagacgagtccctcgccactcgccacttcggagatggtggcgaagaaatgagc
gatgaaatcactcaacaaactttgctgccaggcgtgaaggatccgaatttatggatggtc
aaatgtcgcattggagaagaaaaagctacggtcctactgctgatgcgaaagtttattacg
taccagttctcgaacgagccacttcaaataaaatctgtggtcgctcccgagggagtgaaa
ggatacatttacatagaagcgtataaacagccgcacgtgaaagctgctattgagaacgta
ggaaatttgaggatgggtatctggaaacagcagatggtaccgatcaaagaaatgaccgac
gtgctacgcgttgttaaagagcagacaggtctgaaagcgaagcaatgggtcaggctaaag
agaggaatttacaaagacgatatagcacaagtcgattacgttgatctggcacagaatcag
gttcacttgaaactattgcctagaatcgattatacgagaccgcgcggtgctctgagaacc
gcgcaaagtgaatcggaggcgttgaaacggaagaagaaaagaagaccgccggctaaaccg
ttcgatcccgaagcaattcgtgctatcggtggagaagtgaccagcgacggtgatttttta
attttcgaaggaaacagatacagtagaaaaggatttttgtacaaaaactttacaacaagc
gcgattatcgctgaaggcgtgaagccaacgttgtctgaactcgaacggtttgaggaagct
ccggaaggcgtcgaattagatttaagcggaactcccagtactgggattggtaataaagaa
gacgctgcggtgactcattccttcagtacgggcgacaacgtcgaagtctgcgagggtgaa
ttgatcaacttgcagggaaagatcgtttcgatagatggaaacatgataatggtcatgccg
aaacacgaagagcttaaagaagccttagagtttcaagcttccgagttacggaaatatttc
actatgggtgatcacgtgaaggttgtagctggaagatacgagggtgatactggcttgata
gttcgagtggagcaaaatagagtagtcttattttccgatctttcgatgcacgagctcgaa
gttcttccgagggatttgcaattatgttctgacatggcaacaggcgtggacagcttagga
caatttcagtggggcgatttagtacaattagacgcacagaccgtaggcgtaatcgtacga
ctcgagcgtgagaatttccacgtgctctccatgcacgggaaggtgatagaagctagaccc
cagggacttacgaagagacgcgaaaacagaaatgccgtagctttagattctcaacagaac
accatacaaaagaaagatatcgtgaaagtagtggacggaccacacgctggcagaggtggc
gagattaaacacttgtacagaagcttcgcgttcctgcactcgcggatgttcgtcgacaac
ggaggaatattcgtttgcaagacgagacacttacaactctccggtggaaacaagtccaat
atatcgtccatgttaccagtggcaggattcatgtcaccgagaatcgcgtctccaatgcat
cccagtggaggtggcttcgcgagaggtggtggcggaagaggcaggggccgcggtggtgga
gctagacgtgacagagaattgataggaactaccatcaagataactggtggaccgtacaaa
ggaaacgtcggaatagtgaaagacgccacagataccactgcacgcgtcgagctacattcg
acttgtcaaaccatatccgtggacaggtctcacatcgcgaacgtcgcagttctcacgaaa
gatggaggtttcagcagttacaacaggacgccagcgtatccaggaggtcagactccaatg
tacgcgagagatgggtccaagacacctatgcacggctcccagacacctatgtacgagaat
ggttctcgtacacctcattatggctcgatgactccatctcacgacggttcgcgtacacct
ggacaatccggagcttgggatccgactgttaccaacactccagcgagaacaaacgacttc
gacgggtacagtatggaggagagtggatccccgggctatgcaccgggttacccttctact
ggtggaccgttcacaccgcaaacgccagggacgatgtatggttcggagcaaagtttcagc
tcgtaccaaccgagtcctagcccggcgggaagtgcctccgcgagtcctagccccgcagga
tacgtcgctactccttcaccgagtggtaccggctatactacaagtcctcacggagcgttt
gccacgccgtcgccaatgggttatagccccatgactccaggtgttgcaggtagcccatac
aatccgcagacacctggcgctggtctcgacaccagcgttggctctggaatcatcggagga
accgaatggcacaccacagacatcgaagttcgaatccgtgattctcatcaggatcctgcc
ttggctggtcaacagggtatcattcggggaatatccggtggcatgtgcgcggtcttccta
cccgtggaggatcgggtagttaatttagtttgcgaagacttggaaccggtagttccatcg
cggggggatcgagtcaaagtgatcatgggagaggacagagaagcggtgggcacgctgttg
tccatcgataaccaagaaggtgtcgtcaagttgaacaaggacgaagtgaagatgttgcac
ctgcggttcttgtgcaaaatgaagccggcgaacgcgtaa
DBGET
integrated database retrieval system
