Ceratina calcarata (carpenter bee): 108632338
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Entry
108632338 CDS
T06061
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccal
Ceratina calcarata (carpenter bee)
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccal03016
]
108632338
Enzymes [BR:
ccal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
108632338
Transfer RNA biogenesis [BR:
ccal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
108632338
Prokaryotic type
tRNA splicing ligases
108632338
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
108632338
NCBI-ProteinID:
XP_017892334
UniProt:
A0AAJ7NFA9
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYQEELNYLEKIDENSWRIKKGFQPNMKVEGVFYVNKPLEKLMFDELKNACRPGAV
GGFLPGMKQIANVAALPGIVWRSVGLPDVHSGYGFAIGNMAAFDMNDPKSIVSPGGVGFD
INCGVRLLRTNLFEEDVLPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGIDWS
LREGYIWAEDKEHCEEYGRMLNADSSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAASKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIN
SKEGQDYLKAMAAAANFAWVNRSSMTFLSRQAFAKQFKLSPDDLDMHVIYDVSHNIAKEE
EHMVEGKQKRLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
KETFGSTCHGAGRALSRAKSRRNLDYTDVLEKLERQGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAVGISRKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtcaggcaatatcaggaagaattgaactatttagaaaaaatcgatgaaaactct
tggagaataaagaaaggctttcaacctaatatgaaggttgaaggtgttttttatgtgaat
aaaccattggaaaaattaatgttcgatgagttgaagaatgcatgcagacctggagcagtt
ggaggttttctccctggtatgaaacagattgctaatgtcgctgcacttcctggaattgtc
tggagatctgtcggtttgcctgatgtgcattccggctatggctttgctattggtaacatg
gcagcatttgatatgaatgatccaaagtctatagtatctcctggtggagtaggatttgat
ataaattgtggagtacgtctcttaaggactaatctatttgaagaagacgtgttgccagtt
aaggaacaactcgcacagagtatgtttgaccatattcctgttggcgtcggttcaaaagga
atcatacctatgaacgcaagagatttagaagaagctttagagatggggatagactggtct
cttagagaaggatacatttgggcagaagacaaggaacattgcgaagagtatgggaggatg
cttaatgcagactcttcgaaagtatcaatgagagcgaaaaaacgtggccttccacagttg
ggaaccttgggtgcaggcaatcactatgctgaaatacaagtggtagatgagatctatgac
aaatgggctgcaagtaaaatgggtattgaggaaaagggtcaaatttgtgtgatgattcat
tccggtagcaggggatttggtcatcaagtcgcgactgatgcacttgtacaaatggagaaa
gcgatgaaacgagataacatcgagacgaacgacaggcagttagcttgtgctcatattaat
tctaaagaaggtcaagattacttaaaagcgatggctgctgcagcaaactttgcgtgggtc
aacaggagttctatgacatttctcagtcgtcaggcgttcgcgaaacagttcaagttatct
cccgacgatctagatatgcatgttatatacgatgtctcacataatatcgcgaaggaagaa
gaacacatggtagaaggcaaacaaaaaagacttctagttcacagaaagggatctaccaga
gcgttcccgcctcaccatcctctgattcctgttgattatcaattaacaggccaaccagtt
ttaatcggaggcactatgggaacttgtagttacgttctcactggaaccgaacaaggcatg
aaagaaacattcggatctacatgtcacggagcgggtcgagctctgtctagagctaaatcg
cgacgaaatttggattacacagacgtgttggagaagttagaacggcaaggaatatccatt
agggtagcctcgcctaaattagtgatggaagaagctccggaatcttataagaatgtgacg
gatgttgtaaatacgtgccatgccgtgggaatatcccggaaatgtataaaattaagaccg
atcgcggttatcaaaggatga
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