Ceratina calcarata (carpenter bee): 108632500
Help
Entry
108632500 CDS
T06061
Name
(RefSeq) transcription factor SOX-6 isoform X2
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ccal
Ceratina calcarata (carpenter bee)
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccal03000
]
108632500
Transcription factors [BR:
ccal03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108632500
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
108632500
NCBI-ProteinID:
XP_017892638
LinkDB
All DBs
Position
Unknown
AA seq
842 aa
AA seq
DB search
MSTLGRLRMSSKRKSPPTKLSEGGGGTGTVAGANEEEEDTTSSVTGGPGGEVAVGEEGST
TPVDIEECYSHQRGGDCESSGCSSPATTSEPDLRDSPSPSSNSVRTSKRQRVVLSNQDTL
TPYHYPHHHHHHHHHHHHHHTNTSSSSGGVVEPASSSECGSPPTPLTVDPYYPSNPHHNN
NNTVTQNNNNNTANATTVGTKRSMDDVLKRLTCKMNSESLSLQDDTSNNRRTSPPPSSTP
SGHNTHCGGVASVANSVPPSPPASGRMQNTEGQVQQDGTSALHRVLCAESFAEKERRLSE
MILQLQLLREQLLQQQDQSKSYPAHMTVDSQKQIEIQRLQTEHLKRQQEHIMQHSIQELQ
AQMTKSQLSMSGPQSLMFLPFLEQLRGLPVQSPMPPPPATSTSTTTNKHINSIANMISSH
REGPSWATAHLTQMSTQMEKEASPTPISSAVAPTAPPLQDLDAPLNLTKPKSSSSGATAS
SSSPGSDSHSTGAGSGGQQEQPLAATAPKLFPPGLPMPRNYLTTLPYGSGGLPPHLSPMG
KVMAKDEVAGPGGSVAAAAVAAVEKHFAMHGIYAIPPSAAMPPSPQTQRPMKHSSSREEA
AQEEQDYLSTPHMWREPGYKVPEDITEKAKMVRQQKREGENKPHIKRPMNAFMVWAKDER
RKILKACPDMHNSNISKILGARWKAMSNSEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR
TCIVDGKKMRISEYKSLMRQRRQEMRQLWCRDSGPEMSFLSPVGSDMSSQHHPGSGAGPS
AKPSVSPPATMLNGGGAGPSSDHPSFYYPQDSLSPTDMMNFSPENSGSIGGYDASPRHHD
ED
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgcttggcagattgaggatgtcctcaaagaggaagtcaccaccaacgaagcta
tcggagggcgggggcggcacgggtacagtggcaggcgccaacgaggaagaagaagatacg
acttcatcggtgaccggtggtcccggtggcgaagtagccgtcggtgaagagggttccacc
acccctgtcgatatcgaggagtgttattctcaccaaaggggaggtgattgcgagtcgtcc
ggttgttcgtcaccggcgaccaccagcgagccggacctccgcgactcgccatcgccatcg
tcgaattccgtgcgaaccagcaagcgacagagggtcgtgctgtccaaccaagatacccta
acgccctatcactatcctcaccatcaccaccatcaccaccaccatcatcaccatcaccac
acgaacacatcttcttcgtcgggtggtgtcgtggaaccggccagctcgtccgagtgcggt
tcgccgcccacacctttaaccgtcgacccgtactaccctagtaatcctcatcacaacaac
aacaataccgtgacgcagaacaacaacaataacactgctaacgctaccacagtgggtacc
aagagatccatggacgacgtgttgaaaaggttaacttgcaagatgaacagcgagtcgctg
tcgctgcaggacgacacgagtaacaacaggcggaccagccctccaccctcgtccacgccg
agcgggcacaacacgcactgtggaggcgtcgctagcgtggcgaacagcgtgccaccctcg
ccgccggcatctggcaggatgcagaacacggaaggacaggtacagcaggacgggacctcc
gccctgcacagggtcctctgcgcggaaagcttcgcggagaaggagcgcaggctctccgag
atgatcctgcaactgcagttgctcagggaacaattgctgcaacagcaagatcaatcgaag
tcgtatcctgcgcatatgaccgtcgactcgcagaagcaaatcgagatacagcggctacaa
acggagcacttgaagcggcagcaagagcacatcatgcagcacagcattcaggagttacaa
gctcagatgacaaagagccagctgagcatgtcggggccgcaatccttgatgttcctgcca
tttctcgaacaactcagagggttgccagtgcaatcgcctatgccgccaccgccggctacg
tcgacgtcaaccaccaccaacaaacatatcaattcgatcgctaacatgatcagtagccac
cgggaaggaccgagttgggcaactgcgcaccttacgcagatgtccacgcagatggagaaa
gaggcatccccgacgccgatttcatctgcggtggcacccactgctcctcctctacaagat
ctcgacgcacctttaaaccttaccaaaccaaaatcctcctcgtcaggggctacggcatcc
tcctcgtcgcctggaagtgattcccactcgaccggggccggaagcggcggtcaacaggag
caacccctcgctgcgaccgcgccaaaactctttccacccggtttaccgatgccgcggaat
tatttaacaaccctgccttacggatcggggggcctgccaccgcatctatctccgatgggt
aaggtaatggccaaagacgaagttgctggacctggaggttccgtggcagctgcagcggtc
gctgccgttgaaaaacacttcgcgatgcatggcatttacgcgataccaccgagcgctgcg
atgcccccgtcgccgcagactcaacgaccgatgaagcactcaagttcccgagaagaggct
gcgcaagaggaacaggattatctctcgacgcctcatatgtggcgggaaccgggttacaag
gtaccggaagacataacggagaaagctaaaatggtgaggcagcagaagagggagggtgag
aacaagccacatatcaaacggcctatgaacgcgttcatggtatgggccaaggacgagcgt
agaaaaattctgaaagcttgcccggatatgcataattcaaacatttcaaaaatactcggc
gctcgatggaaagcgatgtcgaactccgagaagcaaccgtactacgaggaacaatcccga
ctgtcgaagcttcacatggaaaagcacccggattacaggtacaggccgcgaccgaagcgg
acctgtatcgtggacggcaagaagatgcggatttccgagtacaagtcgctgatgcggcaa
cggcggcaagaaatgaggcagctctggtgtcgcgacagcggacccgaaatgagtttcctg
tctccggtcggctcggacatgagctctcaacaccatccaggatcgggagccggaccgtcg
gcaaaaccatctgtgtcgcccccggccaccatgctaaacggcggcggagccggcccgagt
tcggatcatccatccttttactacccgcaagacagcctatcgcctacggatatgatgaat
ttctcgccggagaactccggttcgatcggtggctatgacgccagtccacggcatcacgac
gaggattga
DBGET
integrated database retrieval system
