Ceratina calcarata (carpenter bee): 108633056
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Entry
108633056 CDS
T06061
Name
(RefSeq) transcription factor Sox-2 isoform X1
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
ccal
Ceratina calcarata (carpenter bee)
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccal03000
]
108633056
Transcription factors [BR:
ccal03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108633056
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
CSRNP_N
DDHD
VPS13_N
PAT1
Bul1_N
RR_TM4-6
Motif
Other DBs
NCBI-GeneID:
108633056
NCBI-ProteinID:
XP_017893504
UniProt:
A0AAJ7JIG1
LinkDB
All DBs
Position
Unknown
AA seq
497 aa
AA seq
DB search
MLTMETDLKGGSLHGQMPPHPHQGVSPMGHHTGVSPYGSLGSIVHSPALSGSPPSTGGLG
LGLQHHHQAQQHHYASMQAAQQQQQQQQQQQSMHSLAQQSASQQQQHHPHQQQQQQQQQP
QQHHQPPNNNNNTSKNNNIDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEW
KLLSETEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLLKKDKFPLGGGVAGVSGMLG
VDQRQVGSAGGPQQAQLSRDVYQMPNGYMPNGYMMHDPTAAYQQHVAYGGHMGGAAAAAA
ASAAGYPRYDMGHHMGGGSPSPINSYMNGYGGYGTTTVPGGSPSPYHQAQPGSQMSSHSP
SGSSIKSEPTSPASGGIHTPTPTGSSSAGGAGGQVVKREYMGQQQTQQTQGDLRQMISMY
LPQGVEQGVVQHGAGVYSPGPSPDPLGQHHSSIPPLTHMSESERKMLNPETGCYSESVRA
WDWNATSNVRVQESWPT
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgctcacgatggagacggacctgaagggcggcagcctgcacggtcagatgccaccgcac
cctcaccagggcgtatcgccgatgggccaccataccggtgtctcgccgtatggtagcctc
ggctcgatagtgcacagtccggcgctgtccggaagcccgccgagcaccggaggcctcggc
ctgggcctgcagcatcatcaccaggcccagcagcatcactacgcttcgatgcaggctgcg
caacagcaacaacagcaacagcaacaacagcagagcatgcactcgctggctcaacagagc
gctagtcagcagcaacagcatcacccgcatcaacagcaacagcaacagcaacaacagcct
cagcaacatcaccagccgccgaataacaataataacaccagcaagaataacaacattgat
cgtgtgaaaaggccgatgaacgcgttcatggtgtggtcccgcgggcaacgacgcaagatg
gcgcaggagaacccgaagatgcacaactcagagatatcgaaacgattgggcgccgagtgg
aagctactcagtgaaacggagaaacgtccgttcatcgacgaagcgaaacggctgcgagct
gttcatatgaaggagcatcccgattacaagtacaggccacgacgtaagaccaaaacactg
ctgaagaaggataaattcccgctcggcggaggtgtagctggagtcagcgggatgttgggc
gtcgatcaacggcaagttggatctgccggtggtccacagcaggcgcaattgtcgcgagac
gtttatcaaatgccgaacggttacatgccgaacggttacatgatgcacgatccgacggcc
gcgtatcagcaacacgtcgcgtacggcggtcacatgggcggtgcagcggccgcggccgca
gcctcagcggccgggtatccgcggtacgatatgggacaccacatgggcggtggcagcccg
agtcccataaacagctacatgaacggttacggtggttacggaactaccaccgtgcccggt
ggctcgccgtcgccttatcatcaagcccaacccggatctcagatgtcgagtcacagtccc
agcggtagcagcataaaatcggagccgacgagtccggccagcggcggtattcacacgccg
acgccgaccggatcgtcgtcggcgggcggggccggtggacaagtcgtcaagcgagagtac
atgggtcagcaacagacgcagcaaacgcagggtgacttacggcagatgatctcgatgtat
ctgccacagggcgtcgagcagggagtcgtgcaacacggagccggcgtctactcgcctgga
ccgtcgccggatccgctcgggcagcatcactcctccattccacctctcactcatatgtca
gagagtgaacgcaaaatgttgaacccagaaaccggttgttattcggagtccgttcgtgca
tgggattggaacgcgacgagcaacgtgcgcgtacaagaatcctggccaacgtga
DBGET
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