Cupriavidus campinensis: M5D45_02455
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Entry
M5D45_02455 CDS
T08350
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ccam
Cupriavidus campinensis
Pathway
ccam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M5D45_02455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccam03019
]
M5D45_02455
Enzymes [BR:
ccam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M5D45_02455
Messenger RNA biogenesis [BR:
ccam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M5D45_02455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
URF04731
LinkDB
All DBs
Position
1:530459..532045
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AA seq
528 aa
AA seq
DB search
MSFSDLGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML
QLLGESAARNPAPRGARMPVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGIN
PQIEALKRGVDIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKILNI
LPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVAQRAYPVDRERKRELL
AHLVREHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKAGTL
RLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEHGL
LRDIERLIKRQIEQTILPGFEVDPSIVAEPIQKGRQQRGGGGGGQGAGRGQRPPAQAKPR
SEGGERRQERAPKPAAPRQEGQRQDAPRNRPAQPARGANGNGNGNGNGANGGSRGGRQAA
GNGSNGGGNGRGGNGNNAPRPTQDAAGAPPARNRRPAPQAALLGGRKP
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttccgatctaggcttgtccgacaagctggtgcgtgccgtggccgaacagggc
tacaccacgccgaccccgattcaggcgcaggccattcctgccattctcaaaggtggcgac
ctgctcgccggcgcccagaccggcaccggcaagaccgcgggcttcacgctgccgatgctg
cagctgctgggcgaatccgccgcccgcaatccggccccgcgcggcgcccgcatgccagtg
cgcgcactggtgctgacccccacgcgtgagcttgccgcccaggtggaggagagcgtccgc
aactatggcaaatacctgaagctgcgctcgatggtgatgttcggcggcgtgggcatcaac
ccgcagatcgaggccctcaagcgcggcgtcgatatcgtcgtggccacgccgggccggctg
ctcgaccacgtgtcgcagcgcaccatcgacctctcccaggtggaactgctggtgctggac
gaagccgaccgcatgctcgacatgggcttcatccacgatattcgcaagatcctgaatatc
ctgccggccaagcgccagaacctgctgttctcggccacgttctcggacgatatccgcgcg
ctggctgaccggctgctgaacaacccggcctcgatcgaggtggcccgccgcaacaccacg
gcggaaaccgtggcgcagcgcgcctacccagtggaccgcgaacgcaagcgcgaactgctg
gcccatctggtgcgcgagcacgactggcaccaggtgctggtcttcacgcgcaccaagcac
ggcgccaaccggctggccgagcagttgaccaaggacggcctgtccgcgctggcgatccac
ggcaacaagagccagtcggcgcgtacgcgcgcgctgtccgagttcaaggccggcacgctg
cggctgctggtggccaccgatatcgccgcgcgcggcatcgacattgaccagctgccccac
gtggtcaacttcgacctgccgaacgtgcccgaggactatgtgcaccgtatcggccgtacg
ggccgcgccggcgccgagggcgaggcgatctcgctggtctgcgtggacgaacacggcctg
ctgcgcgatatcgagcgactgatcaagcgccagatcgaacagaccatcctgccgggcttc
gaagtggacccgagcatcgtggccgagccgatccagaagggccgccagcaacgtggtggc
ggcggcggtggccagggcgcaggccgtggccagcgcccgccggcccaggccaagccccgg
agcgagggcggcgaacgccgtcaggaacgcgccccgaagcctgccgcgccgcgccaggaa
ggccagcgccaggacgcaccgcgcaaccgcccggcccagccggcgcgcggcgccaacggt
aacggcaacggcaacggcaacggcgccaatggcggcagccggggtggccgacaggcagcc
ggcaacggtagtaacggcggcggcaatggccgcggtggcaacggcaacaatgccccgcgc
cccacgcaggatgccgctggcgcgccgcccgcgcgcaaccgtcgtccggcgccccaggcg
gcgctgctcggcggccgcaagccctga
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integrated database retrieval system
