Cupriavidus campinensis: M5D45_06320
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Entry
M5D45_06320 CDS
T08350
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccam
Cupriavidus campinensis
Pathway
ccam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M5D45_06320 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccam03400
]
M5D45_06320 (mfd)
Enzymes [BR:
ccam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M5D45_06320 (mfd)
DNA repair and recombination proteins [BR:
ccam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M5D45_06320 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
SNF2-rel_dom
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
URF05947
UniProt:
A0AAE9I4H6
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All DBs
Position
1:complement(1352560..1356009)
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AA seq
1149 aa
AA seq
DB search
MPDIHAVTSFANLSLVKPGMRHAVAGLTGSADALLVAAYARQHQGALPMLAVMCANATDA
QRLAEEIPWFAPELRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQTGQCDVMLVPAS
TALYRLAPPAFLAAYTFFFKQGEKLDESALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDL
FPMGSALPYRIDLFGDEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDEAARTAFRGRW
REVFEGDPTKSPIYKDIGNGVPSAGIEYYLPLFFEESATLFDYLPAGTQLAFAGNIDEAI
RRFWADTTQRYTFMRHDRERPLLPPADLFLSEEQFFVAAKPLARVVLQREATAEQSPFSA
ALPDVSVNRRAEDPLVNLEALLLNKTTRVLMCADSAGRRETLMQLFAESGLRPQPVDDFA
AYLAGDAHFSIAVAPLQSGFALPQAQLAFVTEAELYAGTARRTGRRKQEQASAVDSMVRD
LAELKIGDPVVHSEHGIGRYQGLVTMDLGQGEEEFLHLDYDKGSKLYVPVHQLHVISRYS
GADPESAPLHHLGSGQWDKAKRRAAQQIRDTAAELLNLYARRALRQGFAFPLQPKDYETF
AESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVA
MLAPTTLLAEQHFQTLSDRFAEWPVRIVELSRFKTRKEIDAAIKQINEGTVDIVIGTHKL
LSDDVKFQRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDF
SVIATAPQKRLAIKTFVRREEDGVIREAILRELKRGGQVYFLHNEVETIENKRARLMELV
PEARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRADKFGL
AQLHQLRGRVGRSHHQAYAYMLVHDVDGLTKLAQRRLEAIQQMEELGSGFYLAMHDLEIR
GAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKALKAGKEPDLMAPLQVTTEINLGTPALLP
NDYCADVHERLSLYKRLANCETAESVDNIQEELIDRFGRLPPQAQALVETHRLRIAAVPL
GVRKIDAGEASISMQFVPNPPIDAIRIIDLVQKNRHIKLAGQDKLRIEAKMPDVAVRAQT
IKHTLRQLA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacatccacgctgtcacatccttcgccaacctgtcgctggtcaagcccggcatg
cgtcacgcggtggccggcctgaccggctccgccgacgccctgctggtggccgcctacgcg
cgccaacaccagggcgcgctgccgatgctggcggtgatgtgcgccaacgccaccgacgcc
cagcgcctggccgaggaaatcccgtggttcgcgcccgaattgcgcgtgcggctgctgcca
gactgggaaacgctgccctacgacagcttctcgccgcaccaggacctggtatccgagcgg
ctggccacgctgcacgacatccagaccggccagtgcgacgtgatgctggtacccgcctcc
accgcgctctaccggctggcgccgccggccttcctggccgcgtacaccttcttcttcaag
cagggcgagaaactcgacgaaagcgcgctcaaggcccagttcacgctggccggctacgag
cacgtcagcgcggtaatgcgccccggcgagtacagcgtgcgcggcgggctgatcgacctc
ttcccgatgggctcggccctgccgtaccggatcgacctgttcggggacgagatcgagacc
atccgcgcgttcgacccggacacccagcgcagcctgtacccggtgaaggaagtgcgcctg
ctgccgggacgcgagtttccgctcgacgaagccgcccgcaccgcattccggggccgctgg
cgcgaggtgttcgagggagatccgaccaaatcgccgatctacaaggacattggcaacggc
gtgccgtctgccggtatcgagtactacctgccgctgttcttcgaggagagcgccaccctg
ttcgactacctgcccgccggcacgcagctggccttcgcgggcaatatcgacgaggcgatc
cgccgtttctgggccgataccacccagcgctacaccttcatgcggcacgaccgcgaacgc
ccgctgctgccgccggcggacctgttcctgtccgaggagcagttcttcgtggccgccaag
ccgctggcgcgcgtggtgctgcagcgcgaggccacggccgagcagagtccgttctcggcc
gccctgcccgatgtctcggtcaaccgccgcgccgaagaccccttggtcaacctcgaagcc
ctgctgctgaacaagaccacgcgcgtgctgatgtgcgccgactctgccggccggcgcgag
acgctgatgcagctcttcgccgagagcggcctgcgcccgcagcccgtggatgacttcgcc
gcctatctggccggcgacgcgcatttctcgatcgccgtggcgccgttgcaaagcggcttt
gcgctgccgcaggcgcaactggccttcgtgaccgaggccgaactctacgccggcaccgcg
cgccgcacgggccgccgcaagcaggagcaggccagcgccgtcgattcgatggtgcgcgac
ctcgccgaactgaagatcggcgaccccgtggtgcatagcgagcacggcatcggccgctat
caggggctggtgacgatggacctgggccagggcgaggaggaattcctgcacctggactac
gacaagggcagcaagctgtatgtgccggtgcaccagttgcatgtgatctcgcgctactcg
ggcgccgatccggaatccgcgccgctgcaccacctgggctcgggccagtgggacaaggcc
aagcgccgcgccgcgcagcagatccgcgacaccgccgccgagctgctcaacctgtacgcg
cggcgcgccttgcgccagggctttgccttcccgctacagcccaaggactacgagaccttc
gccgaaagcttcggtttcgaggagaccccggatcaggccgccgccatcgccgccgtgatc
gcggacatgacctcgggcaagccgatggaccggctggtctgcggcgacgtaggtttcggc
aagaccgaagtggccctgcgcgccgccttcgtggccgtgctcggcggcaagcaggtggcc
atgctcgcgccgaccacgctgctggcggagcagcacttccagacgctgtccgaccgcttt
gccgaatggccggtgcgcatcgtggagctgtcgcgcttcaagaccaggaaggagatcgac
gcggccatcaagcagatcaacgaaggcaccgtcgatatcgtcatcggcacgcacaagctg
ctctccgacgacgtgaagttccagcgcctgggcctggtcatcatcgacgaggaacaccgc
ttcggcgtgcgccagaaagaggcgctcaagacacttcgcgccgaggtggatgtgctgacg
ctcaccgctacccccatcccgcgcacgctgggcatggcgctggagggcctgcgcgacttc
tcggtcatcgccacggcgccgcagaagcggctggcaatcaagaccttcgtgcgacgcgag
gaagacggcgtgatccgcgaggccatcctgcgcgagctgaagcgcggcgggcaggtctac
ttccttcataacgaggtcgagaccatcgagaacaagcgcgcccggctgatggaactggtg
cccgaggcgcgtatcgccgtggcccatggccagatgcacgagcgcgagctggagcgcgtg
atgcgcgacttcgtggcgcggcgtgacaacatcctgctctgcacgacgattatcgaaacc
ggcatcgacgtgccgaccgccaacaccatcctgatccaccgcgccgacaagttcggcctg
gcccagctgcaccagctgcggggccgcgtgggccgctcgcaccatcaggcctatgcctac
atgctggtgcatgacgtggacggcctgaccaaactggcgcagcgccggctggaggccatc
cagcagatggaggaactcggctccggcttctacctcgccatgcacgacctggaaatccgc
ggcgcgggcgaggtgctgggcgacaagcaatcgggcgaaatccatgaaatcggcttccag
ctgtacacggacatgctcaacgccgccgtgaaggcactcaaggcgggcaaggagccggac
ctgatggccccgctgcaggtgaccaccgagatcaacctcggcacgccggcgctgctgccg
aacgactattgcgccgatgtgcacgaacgcctgtcgctctacaagcggctggccaattgc
gagacggccgagagcgtggacaacatccaggaggagctgatcgaccgcttcggccgcctg
ccgccgcaggcgcaggcgctggtggagacgcaccggctgcgcatcgccgccgtgccgctg
ggcgtgcgcaagatcgatgcgggcgaggccagcatcagcatgcagttcgtgccgaacccg
ccgatcgacgccatccgcatcatcgacctcgtgcagaagaaccgccatatcaagctggcc
ggacaggacaaactgcgcatcgaggccaagatgcccgatgtggccgtgcgcgcccagacc
atcaagcacacgctgcgccaactggcgtga
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