KEGG   Cupriavidus campinensis: M5D45_07475
Entry
M5D45_07475       CDS       T08350                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
ccam  Cupriavidus campinensis
Brite
KEGG Orthology (KO) [BR:ccam00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccam03400]
    M5D45_07475
Enzymes [BR:ccam01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     M5D45_07475
    5.6.2.6  RNA 3'-5' helicase
     M5D45_07475
DNA repair and recombination proteins [BR:ccam03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    M5D45_07475
SSDB
Motif
Pfam: WH_Lhr DEAD_assoc DEAD Helicase_C ResIII TPR_16 AAA_22
Other DBs
NCBI-ProteinID: URF05627
UniProt: A0AAE9I149
LinkDB
Position
1:1578100..1580781
AA seq 893 aa
MNDVFVRPPPVAETLPALFAARHWQPFDFQCEVWEAIGHGQSGLLHATTGTGKTYAAWLG
ALLAFAEPPARAGATPPPLTVLWLTPMRALAADTARALQAPLAELGLDWTVGLRTGDTGS
SERAAQARRLPTALVTTPESLSLLLTRADAREALGRVRVVVVDEWHELIGAKRGVQVQLA
LARLRQWQPGLMVWGLSATLGNLDHASDVLLAGLPDDRRVRVHGHTPKTLVIDTLLPDAA
GRFPWAGHLGLSMLPHVVRELESTSTALVFLNTRSQAELWYQALLDARPEWAGQIALHHG
SLDRAVRDWVEVHLKNGALRAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLLQRAGRSG
HAPGRASRVTVVPTHSLELVEAVAARNAVRAGRIEARESPDKPLDVLVQHLVTVALGGGF
RADDLLAEVRTTWAYRALSDEEWQWSLDFVRQGGRTLSAYPDYRRAMPDEAGVWRVPDAR
LARRHRMSVGTIVSDATMQVRFWTRAGSGGASLGTVEEGFIARLAPGDCFLFGGRLLELV
RVQEMTAYVRRAAGKRPSVPRWNGGKMPLSTELAEAVVDTLEAAQLGHLDPASTPELALI
QPLVDLQARWSALPTRGTLLAETLHSREGWHLFLYPFAGRSVHLGLGSLLAWRLGQQVPA
TFSVAVNDYGLELLASAPLDWAHWLPLVLAEERQRDLAADVLGSLNAGELSLRRFREIAR
VAGLIFQGYPGAHKSARQLQASSSLFYEVFRKHDPANLLLGQAEREVLMQELDAHRLADT
LARLAALRLDLHALKRPSPLAFPLVVEFLREKLSTEKLADRIARMLAELEAAAGPVGDMA
DTDADATQVAEVARFGMADHVKSGGRSGGRSGASGRARRSGRPRKPSKPLPLL
NT seq 2682 nt   +upstreamnt  +downstreamnt
atgaacgatgtcttcgtccgcccgccccccgtggccgagacgctgccggcgctgttcgcg
gcccgccactggcagccgttcgattttcagtgcgaagtctgggaggccatcgggcacggc
cagagcgggctgctccacgccaccaccggcaccggcaagacctacgccgcgtggctgggt
gcgctgctggccttcgccgagcccccggcccgcgccggcgccacgccgccaccgctcacc
gtgctgtggctcacgccgatgcgcgcgctggccgcggacaccgcccgcgccttgcaggcc
ccgctggccgaactcggcctggactggaccgtgggcctgcgcaccggcgacaccggcagc
agcgaacgcgccgcgcaggcgcgccgcctgcccacggcgctggtgaccacgccggagagc
ctctccctgctgctgacccgcgccgacgcccgcgaggcgctgggccgcgtgcgggtggtg
gtggtcgatgaatggcacgaactgatcggcgccaagcgcggcgtgcaggtgcagctggcg
ctggcacggctgcggcaatggcagccagggctgatggtctgggggctgtcggccacactc
ggcaacctcgaccatgccagcgatgtgctgctggccggcctgcccgacgatcgccgcgtg
cgggtgcacggccatacgccgaagacgctggtcatcgacacgctgctgccggacgccgcc
gggcgctttccgtgggcgggacacctcgggctgtcgatgctgccgcacgtggtgcgtgag
ctggaatccaccagcaccgcgctggtgttcctcaacacgcgctcgcaggccgaactctgg
tatcaggccctgctcgatgcgcggcccgagtgggccggccagatcgcgctgcaccacggc
tcgctggaccgcgccgtgcgcgactgggtggaggtgcatctgaagaacggcgcactgcgc
gccgtggtgtgcacgtcgagcctggatctgggcgtggacttcctgcccgtggagcgcgtg
ctccagatcggctcgcccaagggcgtggcgcggctgttgcagcgcgccgggcggtctggc
catgcgccggggcgggcatcgcgcgtgaccgtggtgcccacgcacagcctggaactggtg
gaagccgtggcggcgcgcaacgcggtgcgcgccggccgcatcgaggcgcgcgagtccccg
gacaagccgctcgatgtgctggtccagcatctggtgacggtggcgctcggcggcggcttc
cgggccgatgacctgctggccgaggtgcgcaccacctgggcctaccgggccctgagcgac
gaggaatggcaatggagcctcgacttcgtgcggcagggcgggcgcacgctgtccgcctat
cccgactatcgccgggcgatgcccgacgaggccggcgtctggcgcgtgcccgatgcccgg
ctggcgcgccggcaccgcatgagcgtgggcaccatcgtcagcgacgccacgatgcaggtg
cgattctggacccgggccggcagtggcggggcctcgctgggcacggtggaagagggcttt
atcgcgcggctggcgcccggtgactgcttcctgttcggcggccggctgctggaactggtg
cgcgtgcaggagatgaccgcctacgtgcgccgcgccgccggcaagcggccctcggtgccg
cgctggaacggcggcaagatgccgctttccaccgaactggccgaggccgtggtcgatacg
ctcgaagccgcccagcttggccacctcgacccggccagcacgcccgaattggcgctgatc
cagccgctggtagacctgcaggcgcgctggtcggcgctgcccacgcgcggcacgctgctg
gccgagaccctccattcgcgcgaaggctggcatctgttcctctatccgttcgcgggccgc
tcggtgcatctggggctgggcagcctgctggcgtggcgtctcgggcagcaggtgccggcg
accttctcggtggccgtgaatgactacgggctcgaactgctggcctcggcgccgctcgac
tgggcgcactggctgccgctggtgctggccgaggaacgccagcgcgacctggccgccgac
gtgctcggcagcctgaacgcgggggagctgtcgctgcggcgcttccgcgagatcgcccgc
gtggccgggctgatcttccagggctaccccggcgcccacaagagcgcgcggcagttgcag
gcgtcatcgagcctgttctacgaggtcttccgcaagcacgacccggccaacctgctgctt
gggcaggccgagcgcgaggtgctgatgcaggagctggacgcccaccggctggccgacacg
ctggcccggctggccgcgctgcggctggacctgcacgccctgaaacgtccgtcgccgctg
gcctttccgctggtggtggagttcctgcgcgagaagctgagcacggagaagctggccgac
cgcatcgcccgcatgctggccgaactggaggcggcggctgggccggtgggggatatggcg
gataccgatgccgatgccacgcaagtggccgaggtggcgcgcttcggcatggccgatcac
gtcaagtcaggcggtcgcagtggtggaagaagcggggccagcggtcgcgcacgtcgctcg
gggcgcccgcgcaagccatcgaaaccgctcccgctgctatga

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