Cupriavidus campinensis: M5D45_10190
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Entry
M5D45_10190 CDS
T08350
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ccam
Cupriavidus campinensis
Pathway
ccam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M5D45_10190 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccam03021
]
M5D45_10190 (rho)
03019 Messenger RNA biogenesis [BR:
ccam03019
]
M5D45_10190 (rho)
Transcription machinery [BR:
ccam03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
M5D45_10190 (rho)
Messenger RNA biogenesis [BR:
ccam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M5D45_10190 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
OB_RNB
S1CSD-TOTE-2
ATPase
DnaB_C
Phostensin_N
AAA_19
Motif
Other DBs
NCBI-ProteinID:
URF02932
UniProt:
A0AAE9HYY2
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All DBs
Position
1:2175350..2176612
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AA seq
420 aa
AA seq
DB search
MHLTELKSLHVSALLEMAATLEIDNAQRMRKQELMFAILKKRAKMGETIYGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GQAPEAVKNRIMFENLTPLHPNRPLQLERDIRAEENITGRVIDMIAPIGRGQRALLVASP
KSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMMRSVRGEVVASTFDEPAIRHV
QVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAERRVYPAINL
NKSGTRREELLIKPEILQKIWILRKFISDMDEVQAMEFILDKMKPTKNNAEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgacagaactcaaatcgcttcacgtgtctgcgcttctcgaaatggcggcaacg
ctcgagatcgacaatgcacagcggatgcgcaaacaggaactgatgtttgcgatcctgaag
aagcgcgccaagatgggcgaaaccatctacggagacggcacgctggaagtcctccccgac
ggcttcggcttcctccgctcgccggaaacctcgtacctggccagcacggacgacatctac
atcagcccttcgcagatccgccgcttcaatctccataccggcgattcgatcgaaggtgaa
gtgcggaccccgaaggacggcgagcgctacttcgcgctggtcaaggtggacaaggtcaat
ggacaggcgcccgaggcggtgaagaaccgcatcatgttcgagaacctgacgccgctgcat
ccgaaccggccgctccagctcgaacgtgacatccgcgccgaagagaacatcaccggccgc
gtgatcgacatgatcgccccgatcggccgtggccagcgcgcgctgctggtggcctcgccg
aagtccggcaagaccgtgatgctccagcacatcgcccacgccattgcgaacaaccatccg
gaagcggacctgttcgtgctgctgatcgatgagcgcccggaagaagtgaccgaaatgatg
cgctcggtgcgcggcgaggtggtggcgtcgaccttcgacgaaccggccatccgtcacgtg
caggtggccgaaatggtcatcgagaaggccaagcgcctggtggaactgaagcgcgacgtg
gtgatcctgctggactccatcacccgtctggcacgcgcctacaacaccgtggtgccggcc
tccggcaaggtgctgaccggcggtgtggacgccaacgcgctgcaacgcccgaagcgcttc
ttcggcgccgcgcgtaacctggaagaaggcggttcgctgaccatcatcgccaccgcgctg
atcgaaaccggcagccgcatggatgacgtgatctacgaagagttcaagggcaccggcaac
atggaagtgcacctcgagcgccgcctggccgagcgccgtgtctacccggccatcaacctg
aacaagtcgggcacgcgccgcgaggaactgctgatcaagccggaaatcctccagaagatc
tggatcctgcgcaagttcatctccgacatggacgaagtgcaggcgatggagttcatcctc
gacaagatgaagccgacgaagaacaacgcggagttcttcgacatgatgcgccgcggcggc
tga
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