Cupriavidus campinensis: M5D45_11370
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Entry
M5D45_11370 CDS
T08350
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ccam
Cupriavidus campinensis
Pathway
ccam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M5D45_11370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccam03019
]
M5D45_11370
03009 Ribosome biogenesis [BR:
ccam03009
]
M5D45_11370
Enzymes [BR:
ccam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M5D45_11370
Messenger RNA biogenesis [BR:
ccam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M5D45_11370
Ribosome biogenesis [BR:
ccam03009
]
Prokaryotic type
rRNA processing factors
M5D45_11370
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
URF03145
UniProt:
A0AAE9I081
LinkDB
All DBs
Position
1:2401370..2404558
Genome browser
AA seq
1062 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAFFKDGVDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMGQLTVPDGMSIIARTAGIGRAAEELQ
WDLNYLLQLWKAIDGAAGDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQAR
AFMSVVMPDNMNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSV
DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLEESTASYRMAEAAAKELEADTSYSSRKKEDARPRQEAAVKGITPDAP
APVSVPRPERAPRPEAAAARPVPATQPVAAGGFIAWLKGLFGARPAAAPAAEPAKPAADA
QARGDGRRERGQRGESRGEGRGQGRGERGERGERGDREQRGERGERGERQGRGQRGERAE
RGEQRGAERGERAERGDRAERGERTERGERTERGERPARAPREGQQATPAIARQPEGGEA
RQEGNRRERNQERRERQRERQRERGDTRETEEALNVESAPQTAFEAAQAAPAVAVVAAAA
ATELPEGLEAVATEGAEGEERRRRNRRGRNRYRREREDGVQGADGENGDANDTSNLAEVA
AGVTETEFAPVAAQAAPQVVAQPEPVAVAQVAEVPRVAQVAEVAEVTEAVEIRETRETVE
TVARVEPAAYAQPSQPAQPVSPAPVAEPVFAPVSAPEAAPVVTPAPVYTAPVVEAPAPAP
VEAAPVVAEPVIVTPAVAPTPVAAPAAAPLRADALEPMLASAGLQWVETDNAKLQAAQTA
AANVAPAPRVQRERKPLPPLPEGPMVLVETGGQRDQQQQQQQ
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaacgcgacgcaacaggaagaattgcgcgtcgcgatcgtcgat
ggtcagaaactgatcgatatcgacatcgaaaccgccgggcgcgagcagcgcaagggcaac
atctacaagggcgtcatcacccgcatcgagccctcgctggaagcctgcttcgtcaactac
ggcgaagagcgccacggcttcctgccgttcaaggaagtggcccgtgcgttcttcaaggac
ggcgtggacgtgcgcaacgcgcgcatccaggacgccctgcacgaaggccaggaactgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgccgccctgaccacctttatctcg
ctggccggccgctacctggtgctgatgccgaacaacccgcgtggcggtggcgtatcgcgc
cgcatcgagggcgaggaccgccaggaactgcgcgagacgatgggccagctgaccgtgccg
gacggcatgagcatcatcgcccgcaccgctggcatcggccgcgcggccgaggaactgcag
tgggacctgaactacctgctgcaactgtggaaggccatcgacggcgccgccggcgacaac
aaggccccgctgctgatctatctggaatcgagcctggtcatccgcgccattcgcgactat
ttccagcccgatatcggcgagatcctgatcgataccgacgagatctatgaacaggcacgc
gctttcatgagcgtggtcatgcctgacaacatgaaccgcgtgaagaagtaccgggacgac
gtgcccctgttctcgcggttccagatcgagcaccagatcgagtccgcctattcccgcatg
gtgatgctgccgtccggcggcgccatcgtgatcgaccataccgaagccctggtttccgtt
gacgtgaactcggcccgtgccaccaagggcgcggacatcgaggaaacggcgctgcgcacg
aacctggaagcggccgacgagatcgcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggagtccagcaaggcccagaaggacgtggaaacgcgc
ctgaaggacgccctgcgccacgaccgcgcccgcgtgcagatgggcaagatcagccgcttc
ggcctgatggagctgtcgcgccagcgcctgcgtccttcgctgtcggaaggctcgcacatc
acctgcccgcgctgcaatggaacaggtcacatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggagaacacggccgccatccactgccag
gtgccggtggaagtggccgctttcctgctgaacgagaagcgtcaggaaatcaacctgatc
gagctgcgcttcaaggtgaacgtgctgttgatccccaacaagcacctggaaaccccgcac
tacaagctggagcgcctgcgccacgacgatccgcgcctggaggaatccacggccagctat
cgcatggccgaggccgccgccaaggaactcgaggcggacacgagctacagcagccgcaag
aaggaagatgcgcgtccgcgccaggaagccgccgtcaagggcattacgcccgacgcgccg
gcgccggtgtcggtgccccgccccgagcgcgccccgcgccccgaggccgctgccgcacgt
ccggtaccggccacgcagcccgtggccgccggcggtttcatcgcctggctgaagggcctg
ttcggcgcacgtccggccgccgccccggcggcagagccggccaagccggccgctgacgcc
caggcacgcggcgacggccgccgcgaacgcggccagcgtggcgaaagtcgcggcgaaggc
cgtggccagggccgtggcgagcgtggtgaacgtggcgagcgtggtgatcgcgaacagcgt
ggtgaacgcggcgagcgtggcgagcgccagggccgtggccagcgtggcgaacgtgccgag
cgtggtgaacaacgtggcgccgagcgtggtgagcgcgcggaacgcggtgatcgtgccgaa
cgtggcgagcggactgaacgtggcgaacgcaccgagcgcggtgagcgtccggcacgcgcc
ccgcgcgaaggccagcaggccacgccggccatcgcccgtcagcccgagggtggcgaagcc
cgtcaggaaggcaatcgccgtgagcgcaatcaggaacgccgcgagcgtcagcgcgaacgg
cagcgtgagcgtggcgacacccgcgagaccgaggaagccctgaacgtcgaaagtgcaccg
cagaccgcattcgaggctgcgcaagccgccccggccgtggccgtggtggcagccgccgcc
gcgaccgaactgccggaaggcctggaagccgtggcaacggaaggtgcagagggcgaagag
cgccgccgccgcaaccgtcgtggccgtaaccgctatcgccgcgagcgcgaagatggtgtg
caaggcgccgatggcgaaaacggcgacgccaacgacacgtccaacctggccgaagtggcc
gcaggcgtgaccgagacggaattcgcaccggtggccgcccaggctgcaccgcaagtcgtg
gcccagccggaaccggttgccgtggcccaggtggctgaggtgccccgcgtggcccaggtg
gcggaagtcgccgaggtcacggaagccgtggaaatccgcgaaacacgtgaaacggtggaa
accgtggcccgcgtggaacctgccgcctacgcccagccgagccagccggcccagcccgtg
agcccggccccggtggccgaaccggtgttcgcaccggtcagcgcccccgaagccgcgccg
gttgtgacgcccgcgccggtctacaccgctccggtggtggaagccccggcaccggcaccc
gtcgaagccgccccggtcgttgccgagccggtcatcgtgacgcctgccgtcgcgccgacc
ccggtggcagcgccggccgccgctccgctgcgtgccgatgcactcgagccgatgctggct
tcggccggcctccagtgggtggagacggacaatgccaagctgcaagccgcccagaccgcc
gccgccaacgtggcaccggccccgcgcgtgcagcgcgagcgcaagccgctgcccccgctg
ccggaaggtccgatggtcctggtcgagaccggcggtcagcgcgaccaacagcagcagcaa
cagcagtaa
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