Cupriavidus campinensis: M5D45_12010
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Entry
M5D45_12010 CDS
T08350
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ccam
Cupriavidus campinensis
Pathway
ccam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M5D45_12010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccam03019
]
M5D45_12010
Enzymes [BR:
ccam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M5D45_12010
Messenger RNA biogenesis [BR:
ccam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M5D45_12010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Fe-ADH
HEM4
Motif
Other DBs
NCBI-ProteinID:
URF03259
UniProt:
A0AAE9HW55
LinkDB
All DBs
Position
1:complement(2536678..2538192)
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AA seq
504 aa
AA seq
DB search
MTMTTTPDQTPAAEQTFESFGLDSRILRALTEQGYTTPTPIQAQAIPVVLLGKDVMGAAQ
TGTGKTAGFALPIIQRLLPMSNASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDL
RSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDM
GFLPDLQRIINLLPAQRQTLLFSATFSPEIKRLASSYLKQPVTIEVARSNSTNENVRQMA
YRVEDGHKQAAVVHLLKQRASETDSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKT
QTERMQTLEGFKTGTIDALVATDVAARGLDIPAMPCVINFDLPYSAEDYVHRIGRTGRAG
ASGDALSIYVPGGDDRLLADIEKLIKRSIPRGELNGFDPTGERARSEESDRRRQRGDVRR
ARDNGGEAAAEAEAAPGRRRRTESGGRQAFRPSDDPFFSRPYEPSNHHANAQPADEQLAA
ALSRGRPAPKRPVAALLGGAPRKS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgacgaccaccccagaccagaccccagccgcagagcaaacgttcgaaagcttc
gggctggattcgcgcatcctgcgcgccttgaccgaacagggctacaccacgccgacgccg
atccaggcgcaggccattccggtggtcctcctcggcaaggacgtgatgggcgccgcgcag
accggtaccggcaagacggcaggcttcgcgctgccgatcatccagcgcctgctgccgatg
tcgaacgcgagtgcctcgcccgcgcgccacccggtgcgtgcgctgatgctgacgccgacg
cgcgaactggccgaccaggtctacgacaacgtggcgcgctacgccaagcataccgacctg
cgcagcacggtggtgttcggcggcgtggacatgaacccgcagaccgatgcgctgcgccgt
ggcgtggaaatcctcgtcgccacgccgggccgcctgctggaccacgtgcagcagaagtcg
gtgaacctgtcacaggtgcagatgctggtgctggacgaagccgaccgcatgctcgacatg
ggcttcctgccggacctgcagcgcatcatcaacctgctgccggcacagcgccagacgcta
ctgttctcggccacgttctcgccggaaatcaagcggctggcctcgagctacctgaagcag
ccggtgacgatcgaagtggcacgcagcaactcgaccaacgagaacgtgcgccagatggcc
taccgcgtggaagacggccacaagcaggccgccgtggtgcacctgctcaagcagcgcgcg
tcggaaaccgattcgcgccagtgcatcgtgttcgtcaacagcaagatcggctgctcgcgc
ctggcgcgtcacctggagcgcgagggcatcaacgccgccgccattcacggcgacaagacc
cagaccgagcgcatgcagacgctggaaggcttcaagaccggcacgatcgacgccctggtg
gccaccgacgtggctgcccgtggcctggacatcccggccatgccgtgcgtgatcaacttc
gacctgccgtacagcgcggaagactatgtgcaccgcatcggccgcacgggccgggctggc
gccagcggcgatgcgctgtcgatctacgtgccgggcggcgatgaccgcctgctggccgat
atcgagaagctgatcaagcgcagcattccgcgcggggagttgaatggcttcgacccgacc
ggcgagcgcgcgcgcagcgaggaatcggaccgtcgccgccagcgtggcgatgtgcgccgc
gcccgtgacaacggtggcgaagcggcggcggaggcggaagccgcgccgggtcgtcgtcgt
cgcaccgaaagcggtggccgtcaggcgttccgtccgtcggacgatccgttcttctcgcgc
ccctacgagccgtcgaaccatcacgccaacgcgcagccggccgacgagcagttggccgcc
gcgctgagccgtggccgcccggcgccgaagcgccccgtggcagcgctgctgggcggcgcg
ccgcgcaagtcgtaa
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