Cupriavidus campinensis: M5D45_15880
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Entry
M5D45_15880 CDS
T08350
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ccam
Cupriavidus campinensis
Pathway
ccam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M5D45_15880 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccam03021
]
M5D45_15880 (rpoB)
03400 DNA repair and recombination proteins [BR:
ccam03400
]
M5D45_15880 (rpoB)
Enzymes [BR:
ccam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M5D45_15880 (rpoB)
Transcription machinery [BR:
ccam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M5D45_15880 (rpoB)
DNA repair and recombination proteins [BR:
ccam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M5D45_15880 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
URF03952
UniProt:
A0AAE9I0X8
LinkDB
All DBs
Position
1:complement(3344371..3348477)
Genome browser
AA seq
1368 aa
AA seq
DB search
MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIESYTQFLQAETPTARRKTEGLQAAFSAI
FPISSHNGLARMEFVSYHLSNPPFDVKECQQRGLTFHSALRAKVRLIINDRENPGKVKEV
KEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARII
PYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLQAEGA
QLEFVPERLRGEVARFDIADKNGRVVVEKDKRINAKHIRDLDSAGTKLISVPEDYLLGRV
LAKNIIDPDTGEVIANANDELTETLLENLREAGVKQIQTLYTNDLDQGPYMSQTLRVDET
ADQTAARIAIYRMMRPGEPPTEEAVEALFQRLFYSEESYDLSRVGRMKVNSRLSRPSGEG
SMVLQDEDILETIKILVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERAVK
ERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPG
GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKVVD
SKLTDQVDYLSAIEEGKYVVAQANATVDADGNLIDELVSAREGSERETRMVTPDRVQYID
VAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGIERTVAVDSGT
AVQAMRGGVVDYVDAMRIVIRVNDEEAVAGEVGVDIYNLIKYTRSNQNTNINQRPMVKVG
DIVARNDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTSIHIE
ELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGIVIDVQVFTREGVTRDKRAQSIIDDELK
RYRLDLNDQLRIVEGDAFQRLERLLLDKTVNGGPKKLAKGAKLTREYLADLDKYHWFDIR
PADEEVAAQLEAVKEAIEQKRHEFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETHLGWAA
RGLGQRIGDMLKAQTKAQELRKLLAQVYNESGKPEDLDSLTDAEVLELATNLKKGVPFAT
PVFDGAHEDEIRRMLDLAYPDEIAKEKGLTPSKQQVTLYDGRTGEAFERPVTLGVMHMLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLDRY
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacagcttcaccgaaaagaagcgcattcgcaaatcctttgcgaagcgcgcgacg
gttcatcaggttccattcctgcttgccacccagattgaatcctacacccagttcttgcaa
gcggaaacgccgaccgcgcgtcgcaaaaccgagggtctgcaggccgctttcagcgcgatt
ttcccaatctcctcccataacgggctcgcccgtatggagtttgtctcgtatcacctgtcc
aacccgccgttcgacgtcaaggagtgccagcagcgtggcctgacgttccactcggcgctg
cgtgccaaggttcgcctgatcatcaacgatcgcgagaacccgggcaaggtcaaggaagtg
aaggagcaggaagtctacatgggcgaaattccgctcatgacgtcgaccggttctttcgtg
attaacggcaccgagcgtgtcatcgttagccagctgcaccgttcgccgggcgtgttcttc
gagcacgacaagggcaagacgcacagctcgggcaagctgctgttctcggcacggatcatt
ccgtaccgtggctcgtggctggacttcgaattcgatccgaaggacatcctgtatttccgt
gtggaccgccgccgcaagatgccggtgacgatcctgctgaagtcgatcggcctgacgccg
gagcaaatcctggcgcacttctttgtgttcgacaacttcacgctgcaggcggaaggcgcg
cagctcgaattcgtgcccgagcgtctgcgtggcgaggtggcgcgtttcgacatcgccgac
aagaacggccgcgtggtcgtggagaaggacaagcggatcaacgccaagcacatccgtgac
ctggactccgccggcaccaagctgatcagcgtgccggaagactacctgctcggccgcgtg
ctggccaagaacatcatcgacccggacacgggcgaggtgattgccaacgccaacgacgag
ctgaccgagacgctgctggaaaacctgcgcgaagcgggcgtcaagcagatccagacgctg
tacacgaacgacctggaccagggcccatacatgtcgcagacgctgcgcgtggacgagacc
gccgaccagaccgccgcgcgtatcgcgatctaccgcatgatgcgcccgggcgagccgccc
accgaggaagccgtggaagcgctgttccagcgcctgttctacagcgaagagtcgtacgat
ctgtcgcgcgttggccgcatgaaggtcaacagccgtctgtcgcgcccgagcggcgagggc
agcatggtgctgcaggacgaggacatcctcgagacgatcaagatcctggtgaacctgcgt
aacggcaagggcgaggtcgatgacatcgatcacctgggcaatcgtcgcgtgcgttgcgtg
ggcgaactggccgagaaccagttccgcgctggtctgtcgcgcgtggagcgtgccgtcaag
gaacgtctgggccaggccgagaccgagaacctgatgccgcacgacctgatcaactcgaag
ccgatttcgtcggcgattcgcgagttcttcggttcgtcgcagctgtcgcagttcatggac
cagaccaacccgctctcggaaatcacccacaagcgccgtgtctccgcactgggcccgggt
ggtctgacgcgcgagcgcgccggctttgaagttcgtgacgtgcacccgacccactatggc
cgcgtgtgcccgatcgaaacgccggaaggcccgaacatcggcctgatcaactcgctggca
ctgtacgcccgcctgaacgaatacggcttcctggaaacgccgtaccgcaaggtggtggac
agcaagctgaccgaccaggtggactacctgtccgccatcgaggaaggcaagtacgtggtg
gcccaggccaacgcgaccgtggatgccgatggcaacctgatcgatgaactggtatcggcc
cgcgaaggctccgagcgcgaaacgcgcatggtgaccccggaccgcgtgcagtacatcgac
gtggcgccgtcgcagatcgtgtcggccgctgcctcgctggtgccgttcctggaacacgat
gacgcgaaccgtgcactgatgggcgcgaacatgcagcgtcaggccgtgccttgcctgcgt
ccggacaagccgctcgtgggtaccggcatcgaacgtaccgtggccgttgactcgggtacc
gccgtgcaggccatgcgtggcggcgtggtggactacgtcgacgcgatgcgtatcgtgatc
cgcgtgaacgacgaagaagccgttgctggcgaagtcggcgtggacatctacaacctgatc
aagtacacgcgttccaaccagaacaccaacatcaaccagcgtccgatggtgaaggttggc
gatatcgtcgcgcgtaacgacgtgatcgctgacggcgcctcgaccgacctgggcgagctg
gcactaggccagaacatgctggtggcgttcatgccgtggaacggctacaacttcgaagat
tcgatcctgatctccgaacgcgtggtggccgaagaccgctacacctcgatccatatcgag
gaactgtcggtcgtggcccgtgacaccaagctgggaccggaagaaatcacacgcgacatc
tcgaacctcgccgaagcgcaactcgcgcgtctggacgagtccggcatcacctacatcggt
gccgaagtcgaggctggcgacgtgctggtgggcaaggtcacgccgaagggcgagacccag
ctgaccccggaagagaagctgctgcgcgccatcttcggcgagaaggcttcggacgtgaag
gacacctcgctgcgcgtgccgtcgggcatgagcggcatcgtgatcgacgtccaggtcttc
acccgcgaaggcgtgacgcgcgacaagcgtgcccagtcgatcatcgacgacgaactgaag
cgctaccgcctggacctgaacgaccagctgcgtatcgtggaaggcgatgcattccagcgt
ctggagcgcctgctgctcgacaagaccgtcaacggcggtccgaagaagctggcgaagggt
gcgaagctgacgcgcgagtacctggccgacctggacaaataccactggttcgacatccgt
ccggccgacgaggaagttgccgcccagctcgaggcagtgaaggaagccatcgagcagaag
cgtcacgagttcgacctggccttcgaagagaagcgcaagaagctcacgcagggcgacgaa
ctgccgccgggcgtgatcaagatggtcaaggtgtacctggccgtgaagcgtcgcctgcag
cctggcgacaagatggctggccgtcacggtaacaagggtgtggtgtcgaagatcgtgccg
atcgaggacatgccgtacatggcggacggtaccccggccgacatcgtgctgaacccgctg
ggcgtgccgtcgcggatgaacgtgggccagattctggaaacccacctgggctgggccgcg
cgcggtctgggccagcgcatcggcgacatgctcaaggcgcagaccaaggcacaggagctg
cgcaagctgctggcccaggtctacaacgagagcggcaagccggaagacctggacagcctg
accgacgccgaagtgctggaactggccacgaacctgaagaagggcgtgccgttcgcaacg
ccggtgttcgatggtgcgcatgaggatgaaatccgccgcatgctggacctggcctacccg
gacgagatcgccaaggagaagggcctgaccccgtcgaagcagcaggtcacgctgtacgac
ggccgcaccggcgaagcgttcgagcgtccggtcacgctgggtgtgatgcacatgctgaag
ctgcaccacttggtcgatgacaagatgcatgcgcgctcgacgggtccgtactcgctcgtg
acgcagcagccgctgggcggtaaggcccagttcggtggccagcgtttcggtgagatggaa
gtgtgggcactggaagcctacggcgcgtcgtacgtgctgcaggaaatgctgacggtcaag
tccgatgacgtgaacggccgtaccaaggtgtacgaaaacatcgtcaagggcgagcactcg
atcgacgccggcatgccggaatcgttcaacgtgctggtgaaggaaatccgctcgctgggt
atcgacatcgacctcgatcgttactga
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