Castor canadensis (American beaver): 109674720
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Entry
109674720 CDS
T04791
Symbol
Polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03020
RNA polymerase
ccan03420
Nucleotide excision repair
ccan05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109674720 (Polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
109674720 (Polr2a)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
109674720 (Polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccan03021
]
109674720 (Polr2a)
03400 DNA repair and recombination proteins [BR:
ccan03400
]
109674720 (Polr2a)
Enzymes [BR:
ccan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109674720 (Polr2a)
Transcription machinery [BR:
ccan03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109674720 (Polr2a)
DNA repair and recombination proteins [BR:
ccan03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109674720 (Polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
109674720
NCBI-ProteinID:
XP_020007228
UniProt:
A0A8B7TI51
LinkDB
All DBs
Position
Unknown
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPASPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacggcggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggagtcctgagtccggatgaactgaagcggatgtccgtgacagagggtggt
atcaaatacccagagacgactgagggaggccgccccaagctcgggggcctgatggatcca
aggcagggagtgattgagcggactggtcgctgccaaacatgtgcaggaaacatgacggag
tgtcctggccactttggtcacattgaactggccaagcccgtgtttcatgtgggcttcctg
gtgaagacaatgaaggttttgcgctgtgtctgcttcttttgctcaaaactgcttgtggac
tctaacaaccccaagatcaaggacatcctggccaagtccaaggggcagcccaagaagcga
cttacacatgtctacgacctttgcaaggggaaaaacatctgcgagggtggggaagagatg
gacaacaagtttggtgtggagcagcctgagggtgatgaagatttgacaaaagagaagggc
catggtggctgtggacggtaccagccccggatccggcgctcgggcctggagctgtatgct
gagtggaaacatgttaacgaagactctcaggagaagaagatactgctgagtccggagcga
gtacatgagatcttcaaacgcatctccgatgaggagtgttttgtgctgggcatggagccc
cgctatgcccggccggagtggatgattgtcacagtgctgcctgtgccccctctttctgtg
cggcctgctgtggtgatgcagggctctgcccgcaaccaggatgacttgactcataaactg
gctgacattgtaaagatcaacaatcagctgcggcgaaatgaacagaatggcgcagccgcc
catgtcatcgcagaggatgtgaagctcctccagttccatgtagctaccatggtggacaat
gagctgcccggtttgccccgtgccatgcagaagtctggccgtcccctcaagtccttgaag
cagcggttgaagggcaaggaaggccgggtgcgagggaacctgatgggcaagcgagtagac
ttctcagcccgcactgtcattactcccgaccccaacctgtccattgaccaggttggcgtg
ccccgctccattgctgccaacatgacctttgcagagatcgtcactcccttcaacattgac
agacttcaggaactagtgcgcagggggaacagccagtacccaggggcgaaatacatcatc
cgggacaacggcgatcgaattgacttgcgtttccatcccaagcccagtgaccttcacctt
cagactggctataaggtggaacggcacatgtgtgatggggatattgttatcttcaatcgt
cagccaactttacacaaaatgtccatgatgggccatcgggtccgcatccttccctggtct
acttttcgcttgaatcttagtgtgacaactccatataatgcagactttgatggagatgag
atgaacttgcacctgccacagtccctggagacccgggcggagatccaggaattggctatg
gtgcctcgcatgattgttaccccgcaaagcaatcggcctgttatgggtatcgtgcaggac
acgctcacagcagtacgcaaattcactaagagagatgttttcctagagcggggtgaagtg
atgaacctcctaatgttcctgtctacatgggatgggaaggtcccacagccagctatcctc
aagccccggcccttgtggacaggcaagcagatcttctccctcatcatacctggccacatc
aattgtatccgtacccacagcacccatcctgatgatgaggacagtggcccttataaacat
atctctcctggggacaccaaggtggtggtggagaatggggagctgatcatgggcatcctg
tgtaagaagtctctaggcacttcagctggctctctggtccacatttcctaccttgagatg
ggtcatgacatcactcgcctcttctactccaacattcaaactgtcattaacaactggctc
ctcattgagggtcataccattggcattggggactccattgctgattctaagacttaccag
gatattcagaacactattaagaaagccaaacaggatgtaatagaggtcattgagaaggct
cataacaatgagctggagcccactccaggaaacacactacgtcagacatttgagaatcaa
gtaaatcgcattctcaatgatgcccgagacaaaactggctcctctgcccagaaatctctg
tctgaatacaacaacttcaaatctatggtagtgtccggtgctaaaggttccaagatcaac
atctcccaggtcattgctgtcgttgggcaacagaacgtggaaggcaagcggatcccattt
ggattcaagcaccggactctgcctcactttatcaaggatgattatgggcctgagagccgt
ggctttgtggagaactcatacctggctggcctcacacctactgagttcttcttccatgcc
atggggggacgtgagggtcttattgacacagctgtcaagactgctgagactgggtacatc
cagaggcgactgataaaatccatggagtcagtgatggtgaagtatgatgcaactgtgcgg
aactcaatcaaccaggtagtgcagctgcgctatggcgaggatggcctggcaggcgagagt
gttgagttccagaacctcgctacacttaagccttctaacaaggcttttgagaagaagttc
cgttttgattacactaatgagagggccctgaggcgcaccctgcaggaggatctggtaaag
gatgtgttgagcaatgcacatatacagaatgagctggaacgggaatttgaacggatgcgt
gaggatcgggaggtgctaagagttatcttcccaactggtgacagcaaggttgtcctccct
tgtaaccttctgcgcatgatctggaatgctcagaaaatcttccacatcaaccctcgtctt
ccctctgacctgcaccccatcaaagtggttgaaggagtcaaggaattgagcaagaaactg
gtgatagtgaatggagatgacccactaagccgtcaggctcaggagaacgccacgttgctc
ttcaatatccacctacgatccacactgtgctcccgccgcatggctgaggaatttcggctt
agtggagaggcctttgactggttgcttggggagattgagtccaagttcaaccaagccatt
gcccatcctggggaaatggtgggagctctggctgcacagtcccttggagaacctgccacc
cagatgaccttgaacaccttccactatgctggtgtatctgcaaagaacgtgactctgggt
gtcccccgacttaaggagctcatcaacatttccaagaagccaaagactccctccctcact
gtatttctgttgggccagtctgctcgagatgctgagagggccaaggacattctttgtcgc
ctggaacatacaacattgaggaaggtgactgcaaacacagccatctactatgatcccaac
ccccagagcactgtggtggcagaggatcaggagtgggtgaatgtctactatgagatgcct
gactttgatgtggctcgaatctccccctggctgttgcgtgtggagctggaccggaagcac
atgactgaccgaaagctgaccatggaacagattgctgaaaaaatcaatgctggttttggc
gatgacttgaattgcatctttaatgatgataatgcagagaagctggtcttacgaatccgc
attatgaacagtgatgaaaacaagatgcaagaggaagaagaggtggtggacaagatggat
gatgatgtttttctgcgttgcattgagtccaacatgctgacagatatgaccctgcagggt
attgagcagatcagcaaggtgtacatgcacttgccacagacagacaacaagaagaagatc
atcatcacagaggacggagagttcaaggccctacaggagtggatcctggagactgatggt
gtgagcctgatgcgagtgctgagtgaaaaggatgtggatcctgtacgcaccacatccaac
gacattgtggaaatcttcacggtgctgggcattgaagctgtacggaaggctctggagcgg
gagctgtaccacgtcatctcctttgatggttcctatgtcaattaccggcacttggctcta
ttgtgtgataccatgacctgtcgaggccacttgatggccatcacccgccatggagtcaac
cgccaggacactggacctctcatgaagtgctcctttgaggaaacggtggatgtgcttatg
gaagcagctgcccatggggaaagtgaccccatgaagggggtctcagaaaatatcatgctg
ggccaactagctccagctggcactggctgttttgacctcctgcttgatgcagagaagtgc
aaatatggcatggagatccctaccaatatccctggcttgggggctgctggacccactggc
atgttcttcggctcagcacccagtcccatgggaggaatctctcctgccatgacaccctgg
aatcagggcgcaaccccagcctatggtgcctggtccccaagtgttgggagtgggatgacc
ccaggggcagctggcttctctcccagtgctgcttctgatgccagcggcttcagcccaggt
tactcccctgcctggtctcccacgccaggctctccaggttctcctggcccctcaagcccg
tacatcccctcaccaggtggtgccatgtctcccagctactcacctacatcacctgcctat
gagccccgctcccccggaggctatacaccccagagtccctcgtactcccccacttcaccc
tcctactctccaacctccccatcctactctccaaccagtcccaactatagccccacttca
cctagctactcaccaacttctcccagctactcaccaacttctcccagctactcacccact
tctcccagctactctcccacctctcccagctactcaccaacatctcccagctattcccca
acatctcccagctactcaccaacatctcccagttactccccaacttcacccagctactcg
cccacatctcctagttactccccaacttcacccagctactcgcccacgtcccccagctac
tcaccaacatctccgagctattcacctacatctccaagctactcaccaacttcaccaagt
tactcacccaccagccccaactactctccaaccagtcccaattacaccccaacatcaccc
agctatagcccaacgtcacccagctactcgcctactagtcccaactacacaccagccagt
cctaactacagtcccacctctccaagctattcaccaacttcacccagctactctccaacc
tcaccaagctattccccttcaagcccacggtacacaccacagtcgccaacttatacccca
agctctcccagctacagtcccagctctcccagctacagccctacctcacccaagtacacc
ccaaccagcccttcctacagccccagctcaccagagtacaccccaacctctcccaagtac
tcacctaccagccccaaatactcacccacttctcccaagtactctcctaccagccccacc
tactcacccaccaccccaaagtattcaccaacatctcctacttactcaccaacttctccc
gtctacaccccaacctcccccaagtactcacctacaagccccacttactcacccacttcc
cccaagtactcgcctaccagccccacctactcgcctacttcccccaaaggctctacctac
tcccccacttcccctggctactcacctaccagccccacctacagcctcaccagcccagcc
atcagcccggatgacagtgatgaggaaaattga
DBGET
integrated database retrieval system
