Castor canadensis (American beaver): 109675895
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Entry
109675895 CDS
T04791
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase listerin-like
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
ccan
Castor canadensis (American beaver)
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccan03009
]
109675895
04121 Ubiquitin system [BR:
ccan04121
]
109675895
Enzymes [BR:
ccan01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109675895
Ribosome biogenesis [BR:
ccan03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
109675895
Ubiquitin system [BR:
ccan04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109675895
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
FANCL_C
zf-ANAPC11
zf-rbx1
RINGv
HipN
zf-RING-like
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
109675895
NCBI-ProteinID:
XP_020008065
UniProt:
A0A250Y846
LinkDB
All DBs
Position
Unknown
AA seq
1766 aa
AA seq
DB search
MGGKNKQRTKGNLRPSNSGRAAELLAKEQGTVPGFIGFGTSHSDLGYVPAIQGAEEIDSL
VDSDFRMVLRKLSKKDVTTKLKAMQEFGTMCTDRDTEIVKGVLPYWPRIFCKISLDHDRR
VREATQQAFEKLILKVKKHLAPYLKSLMGYWLMAQCDTYVPAALAAKDAFEAAFPPSKQP
EAIAFCKDEITSVLQDHLLKETPDTLSDPQTVPEEEREAKFHRVVTCSLLALKKLLCLLP
DNELDSLEEKFKSLLSQNKFWKYGKHSIPQIRSAYFELVSALCQRIPQLMKEEASKVSPS
VLLSIDDSDPIVCPALWEAVLYTLTTIEDCWLHVNAKKSVFPKLLTVVREGGRGLATVIY
PYLLPFISKLPQSITDPKLDFFKNFLTSVVAGLSTERLKTSFSECSAVISAFFECLRFIM
QQNLGEEEIEQMLVNDQLIPFIDTVLRDPGLQHEPLFDHLAEILTSWEAKADVEKDDKMA
YDLESVLFNFWKRLSEICVEKINEPEADVKCVLSVSNLLQVLQKPKSPLKSIKKKNSKVR
FADEVPESNKENEKCVSSEGENSEVSELMRESLLTPNSSAILSPLRKKPLEDLVCKLAEM
SINYIKEQKSEQHLQFLSTLLDSFSSSQVFKVLLGNEKESIVKAKPLEITRLAQKNPAVQ
FLYHKLVGWLNEGQKKDAGFLVDILYSALRCCDSDMERKDVLDDLTEEDLKWNSILQVIE
KACSSSVKHALVTPWLKGNVLGEKLVTLADCLCNKELESTVSSESYFLERWTLLSLVLSQ
HVKNDYVIGEIYVERIIVKLHETLSKTKKLSEVENSDSTVSFICDVIYNYFSSAKGCLLM
PSSEDLLLTLFQLCAESKEQTHLPDFLICKLKNTWLSGVSLLVHQTGSTYKQSTFLRLSA
LWLKNQVQSSSLDNTSLQVLLSAVEDLLNTFLESEDTCLLEVYIASVMPNSNEWEKMRHS
LPIQWLHRPLLEGRLSLNYECFKTDFQEQDTKTLPSHLCTSALLSKIILVALKKKIVLDN
NVLEKIIAELLYSLQWCEELDNPPIFLTGFCEMLQKMSITYDNLCALGNTSNLLHLLFNR
SRENGTLWSLIIAKLILSRSISSDEVKPHYKRKESFFPLTEGNLHTIQSLCPFLSKEEKK
EFSAQCIPALLGWTKEDLCGTNGGFGHLAIFNSCLQTRSIDDGELLHGILKIIISWKKEH
EDIFLFSCNLSEASPEVLGVNIEIIRFLSLFLKYCSSPLAESEWDFIMCSMLAWLETTNE
NQALFSVPLIQLFACVSCDLACDLSAFFDSATQDTVGNLPANLISEWKEFFSQGIHSLFL
PLLVTFTGENKDMSETSFQNAMLKPMCETLTYISKDQLLSHKLPKRLDAGQKPNLPEYLQ
TLLNTLAPLLLFRARPVQIAVYHMLYKLMPELPQYDQDNLKSYGDEEEEPALSPPVALMS
VLTTQEDLLENVLGCIPVGQIVTIKPLSEDFCYVLGYLLTWKLILTFFKAASSQLRALYS
MYLRKTKSLNKLLYHLFRLMPENPTYGETAIEVSNKDPKTFFTEELQLSIRETSTLPYHI
PHLACSVYHMTLKDLPAMVRLWWNSSEKRVFNIVDRFTSKYVSSVLSFQEISSVQTSTQL
FNGMTVKARATTREVMATYTIEDIVIELIIQLPSNYPLGSITVESGKRVGVAVQQWRNWM
LQLSTYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKK
FHSACLYKWFTSSNKSTCPLCRETFF
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atgggcgggaagaacaagcagcggaccaaggggaacctgaggccttcaaacagtggtcga
gctgcagaactccttgccaaagaacagggaacagtgcctggatttattggttttggaaca
tctcacagtgacctaggctatgttcctgctattcaaggagctgaagaaatagacagtctt
gtagattctgatttccgaatggtgctgcgaaaactttctaagaaagatgttacaacaaaa
ctaaaagctatgcaggaatttggaactatgtgtacagatagagacacagaaattgtaaaa
ggagttcttccttattggccaagaattttctgcaaaatttcacttgatcatgaccgccgt
gtccgagaagctacacaacaagcttttgaaaaacttatccttaaagtgaagaaacacttg
gctccctatttaaaaagtttaatgggatattggctaatggctcagtgtgatacatatgta
ccagctgcacttgcagcaaaagatgcatttgaagctgcttttcctccaagcaagcagcca
gaagccatagcattttgtaaggatgagattacaagtgtgctacaggatcatcttctaaaa
gaaacacctgataccctcagtgacccacaaactgttccagaggaagaaagagaggctaaa
ttccatcgagttgtaacttgttccttattggcattaaagaaattgctttgtctattacct
gataatgaacttgattctttggaggagaaatttaagtctcttttatcacagaataaattt
tggaaatatggaaaacacagtatacctcagatccgttcagcgtattttgaattagtttct
gctttgtgccagcgcattccacagttgatgaaagaggaagcttccaaagtgagcccatct
gttctactgagcattgatgacagcgaccccattgtctgccctgctctctgggaagctgtg
ctgtatacacttacaactattgaggactgttggcttcatgtaaatgcaaaaaaaagtgtc
tttcccaagctcttaactgtggttcgtgaaggtggccggggcctagcaactgttatatat
ccttatctcctgccatttatcagcaaactccctcagtccattacagatccaaagttggat
ttctttaaaaatttcctcacctctgtagttgcaggactgtcaacagagagactcaaaacc
agcttttcagagtgttcagctgtaatatctgctttttttgaatgcttacgtttcataatg
caacaaaatttaggtgaggaagagattgaacagatgctcgtcaatgatcagttgatccct
tttattgatacagttctcagagacccaggattgcaacatgagccactgtttgaccattta
gcagaaattttaacttcctgggaagccaaagcagatgtggaaaaagatgataaaatggct
tatgacttggagagtgtgctgttcaatttctggaaaagactgtcagagatctgtgttgag
aaaatcaatgagcctgaagctgatgttaagtgtgttttgagtgtatctaacctattacag
gtccttcagaagccaaagagcccactgaagtcaattaaaaagaaaaatagtaaggttaga
tttgctgatgaggtacctgaaagtaataaagaaaatgaaaaatgtgtatcttctgaagga
gagaacagtgaagtctctgaattaatgagggaatctcttctcactcctaattcttcagcc
attctgtctcctttaaggaaaaaacctttggaagacttagtatgtaaacttgcagagatg
agtattaattacatcaaagaacaaaagtcagagcaacatcttcagtttctttctactctg
cttgactcattctcttcaagccaagtatttaaagtgctcctgggtaatgaaaaagagagt
attgtcaaagccaaacctcttgaaataaccagacttgcacagaaaaatcccgcagtgcag
tttttgtaccataaactagtaggttggctaaatgaaggtcaaaagaaggatgctggtttc
ctggtggacattttgtatagtgccctccggtgctgtgacagtgacatggaaagaaaagat
gtcttggatgatctaactgaggaggacctgaaatggaattctattcttcaggttattgaa
aaggcatgttctagttcagttaaacatgctttagtgactccttggctaaaaggcaatgtc
cttggagagaaattggttaccttggcagattgtctttgtaacaaggaattggaatccaca
gtatcttcagaatcttacttcttagaaagatggactcttctaagtttggtattatcgcaa
catgttaaaaatgattacgtgattggagaaatatatgttgaaagaattattgttaagctt
catgaaactttatccaaaacaaagaaattgtcagaagttgaaaatagtgactcaacagtg
tcttttatctgtgatgtgatctataactatttcagctcagcaaaaggatgcttgctaatg
ccatcatctgaagatttattgttaactctctttcagttatgtgctgagagcaaagaacaa
acacacttgccagattttctaatctgtaaactgaaaaatacttggctctctggtgtaagt
ttgttggttcatcaaactggcagtacatataaacagagtaccttcctacgtttgtctgct
ctgtggctgaagaaccaagttcagtcttcatctttggataacacaagtctacaggttctc
ttgtctgctgtagaggatttgctaaatacttttctagaaagtgaagatacttgtcttttg
gaagtttatattgcaagtgtaatgccaaacagcaacgagtgggaaaagatgagacattct
cttcctattcagtggttacacagacctcttttagagggaagattgagtttaaattatgag
tgtttcaaaacagattttcaggaacaagatacaaagacacttcccagccatttgtgtacc
tcagcattattgagcaaaataatcttagtggcactgaaaaagaaaatagtcctagataat
aatgtgcttgagaaaataattgcagaattgctctattcattgcagtggtgtgaagagcta
gacaatccacccatttttctaactggattttgtgaaatgcttcaaaaaatgagcattacc
tatgataacttatgtgcacttggtaatacttctaaccttttacatctgttatttaacaga
tccagggaaaatggcacactttggtctctcattattgctaaattgatcctttcccgaagc
atttcatctgatgaagtaaaaccacattataaaagaaaagaaagtttctttccactaaca
gaaggtaatttgcatactattcaaagtctctgtccatttttgtcaaaagaagaaaagaaa
gaattcagtgctcaatgtatacctgctcttctgggctggactaaggaagacctttgcggt
actaatggaggatttggacatcttgccatttttaattcctgtctgcaaacccgaagcata
gatgatggagagctattacatggtatactaaaaattataatatcttggaagaaagagcat
gaagatatttttcttttcagttgtaatctatcagaagcaagtccagaggtactgggtgta
aacatagaaataatccggtttctttctctgtttctcaaatactgctcatctcctttggca
gagagtgaatgggacttcatcatgtgttccatgttggcttggttggagacaacaaatgag
aatcaggcactgttttctgttccactcatacaactatttgcctgtgtcagctgtgacttg
gcctgtgacctaagtgctttttttgattcagcaactcaggatactgttggcaatcttcct
gcaaatctaatcagtgaatggaaagaatttttttcccaaggcatccacagtttgttttta
cctcttttggtgacctttacaggagaaaataaagatatgtctgaaacatcctttcagaat
gcaatgctgaagcccatgtgtgaaacattaacatatatctcaaaggatcagcttttgagt
cacaaacttcccaaaagattggatgctggccaaaaaccaaacttgccagagtatctccag
actttgctaaatacattggccccattactccttttcagagctagacctgtacaaattgct
gtctatcatatgctctacaaattgatgcctgaattaccacaatatgatcaggataatcta
aaatcatatggagatgaagaagaagaaccagctttgtcaccaccagtggcactgatgtct
gttcttaccactcaagaggacttactagaaaatgtcttggggtgtattcctgttggacag
atagttactattaagccactgagtgaagacttctgttatgttctgggatacctcctcact
tggaaattaatactaactttcttcaaagctgcttcatctcagcttcgggctctgtattca
atgtaccttcggaagacaaagagtttgaataaactactctatcacctgttccgacttatg
cctgaaaatccaacctatggagaaacagctattgaggtctcaaataaggaccctaaaaca
ttctttactgaggagctccaactgagcattagagaaacatcaactcttccatatcatatt
ccacacttggcctgttcagtctatcacatgacattaaaagacttgcctgccatggttagg
ctgtggtggaatagcagtgagaagcgtgttttcaatatcgtggatagatttacaagcaag
tatgtcagcagtgttctttcttttcaagaaatatcttctgtgcaaacaagtacacaacta
tttaatggcatgacggttaaagctcgagctaccactcgagaagtaatggctacttacacg
attgaggacatagtcattgaacttataatacagttgccttcaaattatccgctgggttca
ataacagtggaaagtgggaaaagagttggggtggctgttcagcagtggaggaactggatg
ctgcagttaagcacttacctcacccaccagaatggaagtattatggaaggcttagcatta
tggaaaaacaatgtagacaaacgttttgagggtgttgaagattgcatgatctgtttttca
gtcatccatggtttcaactattctcttcctaaaaaagcctgtagaacgtgcaagaaaaag
ttccattcggcctgcttgtataaatggtttacatctagcaacaaatccacttgtccactc
tgtcgtgagaccttcttctga
DBGET
integrated database retrieval system
