Castor canadensis (American beaver): 109679958
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Entry
109679958 CDS
T04791
Symbol
Col11a1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan04820
Cytoskeleton in muscle cells
ccan04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109679958 (Col11a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
109679958 (Col11a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccan00536
]
109679958 (Col11a1)
Glycosaminoglycan binding proteins [BR:
ccan00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109679958 (Col11a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
109679958
NCBI-ProteinID:
XP_020010583
UniProt:
A0A8B7TSR5
LinkDB
All DBs
Position
Unknown
AA seq
1551 aa
AA seq
DB search
MRTVATYSKEKSKKLTPPKSEKFASKKKKSYQATAKAKVGVKANIVDDFQEYNYGTMESY
QTEAPRRVSGSNEPNPVEEVFTEEYLTGEDYDPQRRNSEDTLYENKEVDGRDSDLLVDGD
LGEYDFYEYKEYEDKPTSPPNEEFGPGVPAETDFTETNINGHGAYGEKGQKGEPAVVEPG
MLVEGPPGPAGPAGLMGPPGLQGPSGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPF
RYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSAGAKGESGD
PGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE
RGPQGPPGLPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPPGQPGIAGVDGPPGP
KGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGK
EGQSGEKGALGHPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGD
RGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF
PGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGE
RGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGE
TGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGA
QGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGP
QGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGP
VGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGP
MGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGEAGSGVSGPK
GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDK
GEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV
GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPGLKGDPGSKGEKGHP
GLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPPGPPGLPGPQGPKGNK
GSSGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHTEGMQADAGDNILDYSDG
MEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSF
KVYCNFTSGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFKRGKLLSYLDVEGNSINTVQ
MTFLKLLTASARQNFTYNCHQSAAWYDVSSGSYDKALRFLGSNDEEMSHDNNPYIKALYD
GCASRKGYEKTVIEINTPKIDQVPVIDVMINDFGDQNQKFGFEVGPVCFLG
NT seq
4656 nt
NT seq
+upstream
nt +downstream
nt
atgagaacagtggccacttactcaaaggaaaagtccaaaaagcttacaccccccaaatct
gaaaaatttgcatccaagaagaagaaaagttatcaagcaacagcaaaagccaaagtaggg
gtaaaggcaaatattgttgatgattttcaagaatacaactatggaacaatggaaagctac
cagacagaagctcctagacgtgtatctgggtccaatgagccaaatccagttgaagaagtt
tttactgaagaatatctaactggagaggattatgaccctcagaggagaaattccgaggat
acactgtatgaaaacaaagaagtagacggcagggactctgatcttctggtagatggagat
ttaggcgaatatgatttttatgaatataaagaatatgaagataagccaacaagcccccct
aatgaagagtttggtccaggtgtaccagcagaaactgatttcacagaaacaaacataaat
ggccatggtgcatatggagaaaaaggacagaaaggagagccagctgtggttgaacctggt
atgcttgttgaaggaccgccagggccagctggacctgcaggtcttatgggtcctccaggt
ctacaaggtccctctggaccccctggtgaccctggggataggggtcccccaggacgtcct
ggcttaccaggggctgatggtttacctggtcctcctggcaccatgttaatgttaccgttc
cgttatggtggcgatggttccaaaggaccgaccatctctgctcaggaagctcaggctcaa
gccattcttcagcaggctcggattgctctgagaggcccacctggtccaatgggtctaact
ggaagaccaggtcctgtggggggacctggctcagcaggggccaagggtgagagtggtgat
ccaggtcctcagggccctcgaggtgtccaaggtccccctggtccaacaggaaaacctgga
aaaagaggtcgtccaggtgctgatggaggaagaggaatgccaggagaacctggggcaaag
ggagatcgagggtttgatggacttccaggtctgccaggtgacaaaggtcacaggggtgaa
agaggtccgcaaggtcctccaggtcttcctggtgatgatggaatgaggggagaagatgga
gaaatagggcccaggggtcttccaggtgaagcaggaccacgaggtttgctgggaccacgg
ggaactccaggacctccagggcagcctggtattgcaggtgtagatggacccccaggacca
aaagggaacatgggtccccaaggagagcctggtcctccaggtcagcaagggaatccagga
cctcaaggacttcctggtccacaaggtccaatcggtcctcctggtgaaaaaggaccacaa
ggaaaaccaggtcttgctggactccctggggctgatgggcctcctggtcatcctggaaaa
gaaggccaatctggagaaaagggtgctctgggtcatcctggtcctcagggtcctattggc
taccctggtccccgaggagtgaagggagcagacggtgtcagaggactcaagggatctaaa
ggcgaaaagggtgaagatggctttccaggattcaaaggtgatatgggtcttaaaggtgac
agaggagaagttggccaagtaggcccaagaggagaagatggccctgaaggacccaaaggt
cgtgcaggtccaactggagacccaggtccttcaggccaagcaggagagaaggggaaactt
ggagttccaggattaccaggatacccaggaagacaaggtccaaagggttccactggattt
cctgggtttccaggtgccaacggagagaagggtgcccggggagtcgctggcaaaccaggc
ccccgcgggcagcgtggtccaacgggtcctcgaggttccagaggagcaagaggtcccact
gggaaaccggggcccaaaggcacttcaggcggtgatgggcctcctggacctccaggtgaa
agaggtcctcaaggacctcagggtcctgttggattccctggaccaaaaggccctcctggg
cctcctgggaaggatggactgccaggacaccctgggcagcgtggggagactggatttcaa
ggcaagacaggcccccctggaccaggaggcgttgttgggccccagggaccaactggtgag
actggtccaataggtgaacgtggacatcctggtcctcctggtcctcctggagagcaaggt
cttcctggtgctgcaggaaaagaaggcgcaaagggtgatccaggtcctcaaggagtctcg
ggaaaagatggaccagcaggattacgtggtttcccaggggaaagaggtctgcctggagct
cagggtgcacctggactgaagggaggagaaggcccccagggtccaccaggtccagttggc
tcaccaggagaacgtggatcagcaggcacagctggccccattggtttgccaggacgtcca
ggaccccagggccctcctggtccagctggagagaaaggtgctcctggagaaaaaggtccc
caaggccctgcaggaagagatggagttcaaggtcctgtaggtctccctggaccagcaggt
cctgctggctcccctggagaagatggagataagggtgaaattggtgaaccaggacaaaag
ggcagcaagggtgacaaaggagaaaatggcccccctggtcccccagggcttcagggacct
gttggtgcccctggaattgctggaggtgatggtgaacctggtcccagaggacagcagggg
atgtttggacaaaagggtgacgagggtgccagaggcttcccaggccctcctggtcccatc
ggtcttcagggtctgccaggcccacctggtgagaaaggagaaaatggagatgttggcccc
atgggtccacctggtcctcctggcccaagaggccctcaaggtcccaatggagctgatgga
ccacaaggaccaccaggatctattggctcagttggtggtgttggggaaaagggtgaacct
ggagaagcagggaacccagggcctcctggtgaagcaggatccggtgtaagtggtcccaaa
ggagaaagaggagaaaaaggagaagctggtcctccaggtgctgctggaccaccaggtgct
aaggggccaccaggtgacgatggccctaagggtaatccgggtcctgtcggttttcctgga
gatcctggtcctcccggggaacctggccctgcaggtcaagatggtgttggtggtgacaag
ggtgaagatggagatcctgggcaaccgggtcctcctggtccatctggtgaggctggccca
ccaggtcctcctggaaaaagaggtcctcctggagctgcaggtgcagagggaagacaaggc
gaaaaaggtgctaagggagaagcaggtgctgaaggtcctcctggtaaaactggccccgtc
ggccctcagggccctgctggaaagcctggtccagaaggtcttcggggcatccctggtcct
gtgggagaacaaggtctccctggagcagcagggcaagacggaccacctggtcctctggga
cctcctggtttacctggtctcaaaggtgaccctggctccaagggtgaaaagggacatcct
ggtttaattggcctgattggccctccaggagagcaaggggaaaagggtgacaggggactc
cctgggactcaaggatctccaggtgcaaaaggggatgggggaattcctggtcctgccggt
cccataggcccgcctggccctccaggattaccaggtccccaaggtcccaagggtaacaaa
ggctcttctggacctgctggccaaaagggtgacagtggtcttccagggcctccagggcct
ccgggtcctcctggggaagttattcagcccttacccatattgtcacccaagaaaacaaga
agacatactgaaggcatgcaggcagatgcaggtgataatattcttgattattcagatgga
atggaagaaatatttggttccctcaattctttgaaacaagacattgagcatatgaaattt
ccaatgggtactcagaccaatccagcacggacttgcaaagacctgcaactcagccatcct
gatttcccagacggtgaatattggattgatcctaatcaaggttgttcaggagattccttc
aaagtttactgtaatttcacatctggtggtgagacttgcatttacccagacaaaaagtct
gagggagtaagaatttcatcatggccaaaggagaaacctggaagttggtttagtgaattt
aagagaggaaaactgctttcatatttagatgttgaaggcaattccattaacacggtgcaa
atgacattcctgaaacttctgactgcctctgctcggcaaaatttcacctataactgtcat
cagtcagctgcctggtatgatgtgtcatcaggaagttatgacaaagctcttaggttccta
ggatcaaatgatgaggagatgtcccatgacaacaacccttatatcaaagcactgtatgat
ggctgtgcgtccagaaaaggatacgaaaagactgtgattgaaatcaatacaccgaaaatt
gatcaagttcctgtcattgatgtaatgatcaatgactttggtgaccaaaatcagaagttt
ggatttgaagttggtccagtttgctttcttggttaa
DBGET
integrated database retrieval system
