Castor canadensis (American beaver): 109681318
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Entry
109681318 CDS
T04791
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109681318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccan03019
]
109681318
03036 Chromosome and associated proteins [BR:
ccan03036
]
109681318
Enzymes [BR:
ccan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109681318
Messenger RNA biogenesis [BR:
ccan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109681318
mRNA degradation factors
5'-3' decay
Decapping complex
109681318
Chromosome and associated proteins [BR:
ccan03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109681318
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
109681318
NCBI-ProteinID:
XP_020011611
UniProt:
A0A250YIW2
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTQTQQQMNQLKNTNTINNGTQQQAQ
SLTTTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVED
EKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttataatgggtctgtccagtcagaatggtcag
ctgaggggccctgtgaagcccagtggtggccctggaggagggggcacacagacacagcaa
cagatgaaccagttgaaaaacaccaacacaatcaataatggcactcaacagcaagcacag
agtttgaccaccactattaaacctggtgatgactggaaaaagactttaaaactccctcca
aaggatctaagaatcaaaacttcggatgtgacctccacaaaaggaaatgagtttgaagat
tactgtttgaaacgggagttactgatgggaatttttgaaatgggctgggaaaagccatct
cctattcaggaggagagcattcccattgctttatctggtagggatatcttagctagagca
aaaaatggaacaggcaagagcggtgcctacctcattcccttacttgaacggctagacctg
aagaaggacaatattcaagcaatggtgattgttcccactagagaacttgctctacaggtc
agtcaaatttgcatccaggtcagcaaacacatgggaggggccaaagtgatggcaaccaca
ggaggaaccaatttacgggatgacataatgaggcttgatgatacagtacatgtggtcatc
gctacccctggcagaatcctggatcttatcaagaaaggagtagcaaaggttgatcatgtc
cagatgatagtattggatgaggcagataaattgctgtcacaggattttgtgcagataatg
gaagatattattctcacgctacctaaaaacaggcagattttactgtattccgctactttc
cctctcagtgtgcagaagttcatgaattcccatttgcagaaaccctatgagattaacctg
atggaggaactaactctgaagggagtaacccagtactacgcatatgtaactgagcgccaa
aaagtacactgcctcaatacacttttctctaggcttcagataaaccagtcgatcattttc
tgtaactcttctcagcgagttgaattgttagccaagaagatttctcagctgggttactct
tgcttctatatccatgctaaaatgaggcaggaacatcgaaatcgtgtgtttcatgatttc
cgaaatggcttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgatata
caagctgtgaatgtggtaataaattttgacttcccaaagctggcggagacctatcttcat
cgtattggaagatcaggtcgctttggacatcttggcttagccatcaacttgatcacctat
gatgatcgcttcaacctgaaaagtattgaggagcaactgggaacagaaattaaacctatc
ccaagcaacattgacaagagcctatatgtggcagaataccacagcgagcctgtagaagat
gagaaaccttaa
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