Castor canadensis (American beaver): 109681678
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Entry
109681678 CDS
T04791
Symbol
Slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
109681678 (Slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccan04121
]
109681678 (Slx4)
03400 DNA repair and recombination proteins [BR:
ccan03400
]
109681678 (Slx4)
Ubiquitin system [BR:
ccan04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
109681678 (Slx4)
DNA repair and recombination proteins [BR:
ccan03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
109681678 (Slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
YlbE
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
109681678
NCBI-ProteinID:
XP_020012110
UniProt:
A0A8B7U367
LinkDB
All DBs
Position
Unknown
AA seq
1718 aa
AA seq
DB search
MDESDDDFKELCASFFQRVKKNGTKEVSGERKTLKASNSTQIRSKLKKTKQSAINSKTVQ
GTVEKKPKSGIQAPRTKKQVTTKLQESEPALPVNGEGGVLVSAPDQPVLWERAQSIQTAV
SSPSKYRPRAADLAVQRMQQFKRADPERLTHASKECALMAALEENVPKSPQEETVTENGY
EPGLPATNSDAAVALALQQEFGRESASTCDNGLEERGLFFCQMCQKNLSAMNATRREQHV
NRCLDEAEKVPESSVPQIPECPICGKPFLTSKSRASHLKRCAVKMEVRPQLLLQAVRLQT
AQPEVGSSPPAPSFSNHAGGLKRKGTTSKKEPQKRRKVNKPEAPSEDLLVAMALSRSEME
QSLAVPALRLESASSEMIRFGAEKKHRKKKPLLSLPQLLVQDSETTGRQIEDRVAQLLSE
EMEMLSTPPLPPSKIFKEEFQEAGWRLQVPKGKQNFLWESSALTGTWAVESFYTEGLVPP
IVPQQSAKESELPLELSKHPQPSIQRPPALHGSPPAGCSPRDPSLSASQREHQALQDLMD
LAEEGLGAGPWPRSSGGPADETPGGLDLMPSSLPLTGFVLTPKEKPPERSGHASLSLGLL
IADFSTMVNNPHLSDVQFQMDSGEVLYAHKCVLYARCPLLIQHINSEGFSAFEDGDQTQR
VLLSNVRAEAACAFLYYLYTADTDLPPDLAPDLRSLALRFGVNDLVHLCEQVPIVTDLEG
EQEEKEDKNCESRAENFQELLRSVWVDEEEEAETLLKSESHEEDREKVNEAEMEEIYEFA
ATQRKLLQGGGVTDTDEDPGQLRENSSVVGPTLAASNKKLEKAEQRESPWLERDETPGSW
ENARHSLLLLQDQHSDDAGKAETHEQEAPKEAPGHLSFCSPFGGCLAGRKDDFLLHPVKV
REGEQFFTATQGEFSERFQITSNHELQNGTIREWRAELVRPPTPQQASPPNPSCLLRQSP
GGRSPSQSQFHLHDASTSSLSTPQSHSGVSQVASPSPLSPVVPSKQRRDNSILTSLKESG
HRKGKRCSSMLECKNTSVLISPEKSQPIDLTQSKPDHLSSGSQDPPSRVNKEVEIILLLD
SDEELELAQAKTKSASHDPPEERNILEVSPKSSELFSVIDVDADQEYYQSPLRREVKLQP
EEEEGQLENQVALGNRRTPWLFCNQDSSPAEDSTTTSWLVPATPLDSRNRDCSSQTRVTS
LRMRTPPGEMARPVPRASFEHRAVQEAAHRFSPSTPGTSDSGRQAYRSPRHHTLPSALGP
RCDFTRRHQKLSPPEPCLPNQAAASEVVEVRDSEDEEGVTSHQVNSDPLVPGDDCYWNIE
PLSPIPIDHLSLNRTGPLSTSSPSSRLQEAPDGGACRSPGLLGTTPIRGSCAAQRGSQEH
PAWDSSPGSSRLSFPNPVLWDEWDGEGQRSPESPAAAQTPRARVQKPEGPETPKGARRKK
NLPPKVPVTPMPQYSIMETPVLKKELDRFGVRPLPKRQMVLKLKEIFQYTHQTLESDSED
EIQSSQVPLEVPCSQTLATKTYKPSRAGGHTQIKGTVGPGTQSSKGSTKTKGPQPRKQQP
SESIPHPSRSSASELPPGPDGDAQLSASQESVATSVDSSDSSFSLQSSSSCELGAAFESA
GEDEGEEEAAIPAADTEEAVRRYVRSKPALYRKVLMYQPLELAELQAELKRDGIRVATAK
LLDILDTHCITFTTAAARKEKLERKGQQRVGRKKGERN
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtccgatgatgattttaaagaactctgtgccagctttttccaaagggtgaaa
aaaaatgggacgaaggaagtatcaggagaaaggaagacactgaaggcctcaaacagcact
cagataaggagcaaactgaaaaagaccaaacaatctgctatcaacagcaagactgttcag
ggcactgtggagaagaaacctaaatcaggcatccaggcccctaggactaaaaagcaagtg
acaaccaagttgcaagaaagtgaaccagctctccctgtgaatggagagggaggcgtgctt
gtttctgctccagatcagcctgtgctctgggaaagagcacagagcatccagacagcggtg
tcaagtccctccaaataccgacctcgtgccgcagacctggctgttcagcggatgcagcag
tttaagagagcagaccccgagcggttgacacatgcttccaaagagtgtgccctgatggcc
gccctggaagaaaatgtcccaaagagccctcaagaggaaacggtgacagaaaacggatat
gaacctggactccctgccaccaacagtgatgctgccgtggccttggccctgcagcaggag
tttggaagggaaagtgcttccacgtgtgataatggcttggaggagagggggttgttcttc
tgccagatgtgtcagaagaacctctctgccatgaacgcgacccgcagggagcaacatgtg
aacaggtgcttggatgaagctgaaaaggtaccagagtcttccgtgcctcagattcctgaa
tgcccaatttgtggcaaaccgttcctcacctccaagagccgagccagtcacttgaagcgg
tgtgcagtgaagatggaggtgaggccccagctcctgctgcaggctgtacggttgcagaca
gctcagcctgaggtgggcagcagccctccagcacccagcttcagcaaccatgctggaggt
ttgaaacgaaaaggaaccaccagtaagaaggagccacagaagaggcggaaggtcaacaag
cctgaggcaccatctgaggacctgctggtggctatggctctgtcccgatctgagatggag
cagagtctagctgtgcctgcactcagactggaaagtgcttcttctgaaatgataagattt
ggagcagagaaaaaacatcgcaagaagaaacccctgttgtccctgccacagttattagtc
caggactctgagaccacaggtagacagattgaggatcgcgtggcccagctcctgtcagag
gaaatggaaatgttgagcaccccaccacttcctcccagcaagattttcaaggaagagttc
caagaggcaggctggcgtctgcaggtgcctaaaggaaagcagaactttctgtgggagagc
agcgccctgactggaacctgggctgtggagtccttctacaccgagggcctggtgcctccc
attgtgccccagcagtctgccaaggaatctgaactaccactggagctgtctaagcaccca
cagccaagtatacaaaggccacctgctctccacggcagtccccctgcaggctgcagcccc
agggacccgtcactatctgccagccagagggagcaccaggccctacaggaccttatggat
ttggcagaggaggggctgggcgctggcccatggcccaggagctcaggagggcctgcagat
gagacaccgggtgggttggatttgatgcccagcagccttccactgaccgggtttgtcctg
acacccaaggagaagccccccgagagaagtggccatgcttcgctctcccttgggttgctg
attgccgacttcagcaccatggtcaataacccacacctgagtgatgtccagttccagatg
gacagcggggaggtgctttatgcccacaagtgcgtcctttatgcccgatgtccactcctc
attcagcatataaacagcgaaggcttctctgccttcgaggatggagatcagacccagcgt
gtcctgctgagcaacgtgagggccgaggccgcctgtgcgttcctgtactatctctacaca
gcggacactgacctgccccccgacctggcccctgacctgcgctccctggccctcaggttt
ggtgtgaatgaccttgttcacttatgtgaacaagtgcctattgtaacagacttggagggt
gaacaagaggagaaggaagataagaattgtgaaagcagagcagagaatttccaagaactc
ttgaggtcagtgtgggtagatgaagaggaggaagcagagactttgttgaaatctgagagc
cacgaagaagacagagaaaaagtgaatgaagcagaaatggaagaaatttatgaatttgct
gctactcaacgaaagctgctccagggaggaggagtaacagacacagatgaggaccctggc
caactcagggagaacagttcagttgttgggcctaccctggcagcttccaacaaaaagttg
gaaaaggcagaacaaagagaatcaccttggctggaaagagatgagaccccaggtagctgg
gaaaatgcaagacattcccttctgctgctccaggaccagcactcagatgatgcagggaag
gcagagacccatgagcaagaggcaccaaaggaggcacctggccatctcagcttctgcagc
ccttttgggggttgcctagcaggaagaaaagacgacttccttttgcacccggtcaaggtc
cgtgaaggtgaacagttctttacagcaactcaaggagaattctctgaacgtttccaaata
acgagcaatcacgaactgcagaatggtaccatcagggagtggagagcagagttggtccgt
cccccaactccacaacaggcgtccccaccaaacccatcctgcctcctgagacagtcccct
ggtggcagaagtcctagccagtcacagttccaccttcatgacgcaagtacctcgtccttg
tccactccccagtcacacagtggtgtttcccaggtggcttccccaagtcccctgtctccg
gttgtaccatcaaagcagaggagggacaatagcattctcacatcacttaaggaatcaggc
catcggaaaggcaaaagatgtagttcaatgttggaatgcaaaaatacgagcgtcctgatt
tccccagaaaaatctcaacccattgacctgacacagtcaaaacccgaccacttgagttcc
gggtcccaggatcctccatcccgcgtgaacaaggaagttgagatcatccttttactggat
tcagatgaagagctggagctagcacaggctaaaacaaagtcagcttctcatgatccccca
gaagaaaggaacattctggaagtcagtcccaagtcctctgagctcttttcagtcattgac
gttgatgcagatcaagaatactatcaaagtccactgaggagagaagtcaagcttcaacca
gaggaagaggagggacagttggagaatcaggtcgctttgggcaacagaaggaccccttgg
ctgttctgcaaccaggacagcagccctgctgaggacagcaccacaacctcatggctggtg
cctgccaccccactagacagcaggaaccgagactgctcgtcgcagacccgggtcacaagc
ctgaggatgaggactccacctggtgagatggctcggccagtgcccagggcctcctttgaa
cacagggcagtgcaggaagctgcacacaggttctcacccagcactccaggaacttctgat
agcggaaggcaggcgtacagaagccccaggcaccacacgcttccctctgcgctgggacca
cgttgtgatttcaccaggcggcaccagaagctctcgccacctgagccatgcctgccaaat
caggctgcggcaagtgaggtggtggaagttagggacagtgaagatgaggagggtgtgacc
tcccatcaggtgaacagcgatcccctggtccccggagatgactgctattggaatattgag
cctctctcacccattccaatcgatcacctgagcctgaaccgcactggccccctgagcacc
agcagtcccagcagtcgtctccaggaggccccggatgggggggcctgccgctccccagga
ctcttaggcaccacccccattcggggaagctgtgctgcccaaagaggatctcaagagcac
cccgcatgggacagctccccagggagcagcaggctgagcttcccgaatccggtcctgtgg
gacgagtgggacggggaaggacagagatctccagagtctcctgctgcagcccagacacca
cgtgcccgagtgcagaaaccagaagggccagagacgccaaaaggtgctcgtcggaagaag
aacttgccccccaaagtgcctgtaacgccaatgccacagtactccatcatggagaccccc
gtgctgaagaaagaactggacaggtttggagttcggcctttgcccaaacgccagatggtt
ctgaaactgaaggagattttccagtacactcaccagaccttggagtcggactctgaggat
gagatccagtcctcacaggtgcctctggaggtgccttgcagccagaccctcgccacaaag
acctacaagccttcaagggcaggaggccacacacaaattaagggcactgtaggtcctggg
acccaaagttccaagggatccactaagaccaagggcccccaacctcgaaaacagcagccc
agtgaaagcatcccgcacccaagcaggtcatcagccagtgagctgcctccaggccctgat
ggtgacgcccagctctcagcctcccaggaatcggtggccacctctgtggacagcagtgac
agctcctttagcttacaaagctcttcctcctgtgagttgggagctgcctttgagtctgca
ggtgaagatgagggtgaggaggaggccgccatcccggcagcagacacagaggaggcagtg
agacgctatgtccgttctaagccagccctgtaccggaaggtgctgatgtaccagcccctg
gagctggcggagctacaggctgagctgaagcgggatggcatccgtgtggctacagccaag
ctgctggacatcctggacacccactgcatcaccttcaccactgctgcagcccggaaggag
aagctcgagcggaaggggcagcagcgtgtgggcaggaagaaaggggagaggaattga
DBGET
integrated database retrieval system
