KEGG   Castor canadensis (American beaver): 109681925
Entry
109681925         CDS       T04791                                 
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
ccan  Castor canadensis (American beaver)
Pathway
ccan03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccan00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109681925 (Sf3b1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccan03041]
    109681925 (Sf3b1)
   03036 Chromosome and associated proteins [BR:ccan03036]
    109681925 (Sf3b1)
Spliceosome [BR:ccan03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    109681925 (Sf3b1)
 Complex B
    109681925 (Sf3b1)
 Complex C
   U2 SnRNP specific factors
    109681925 (Sf3b1)
Chromosome and associated proteins [BR:ccan03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    109681925 (Sf3b1)
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 TALPID3
Other DBs
NCBI-GeneID: 109681925
NCBI-ProteinID: XP_020012477
UniProt: A0A8B7U037
LinkDB
Position
Unknown
AA seq 1338 aa
MRGEQSPLFFSVAVAATSGSSWERQFRLCVRLNKMAKIAKTHEDIEAQIREIQGKKAALD
EAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYHA
PVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPK
MNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQ
TPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAA
TPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGET
PTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAW
RWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHM
QTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKN
GTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDL
VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRN
TTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSL
VEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAF
LKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYI
KTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRK
MVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVK
PYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEY
PEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG
AEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQER
QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI
YAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHV
IQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPR
IYNDDKNTYIRYELDYIL
NT seq 4017 nt   +upstreamnt  +downstreamnt
atgcgcggagagcagtccccgctatttttctccgtggcggtggcggcgacgagcggaagt
tcttgggagcgccagttccgtctgtgtgttcgactgaacaaaatggcgaagatcgccaag
actcacgaagatattgaagcacagattcgagaaattcaaggcaagaaggcagctcttgat
gaagctcaaggagtgggccttgattccacaggttattatgaccaggaaatttatggtggg
agcgatagcagatttgctggatatgtaacatcaattgctgcaactgaacttgaagatgat
gacgatgactactcatcatctacaagtttgcttggtcagaagaagcctggatatcatgcc
cctgtggcactgctcaacgacataccacagtcaacagaacagtatgatccatttgctgag
caccgacccccaaagattgcagaccgggaagatgaatacaaaaagcacaggcggaccatg
ataatttccccagagcgtcttgatccttttgcagatggagggaagacccctgatcctaaa
atgaatgctagaacatacatggatgtaatgcgagaacagcatttgactaaagaagagaga
gaaattaggcaacaactagcagaaaaagctaaagctggagaactaaaagtcgtcaatgga
gcagcagcatcccagcctccctcaaaacgtaaacggcgctgggatcaaacagccgatcag
actcctggtgccactcctaaaaagctatcaagttgggatcaggcagaaactcctgggcat
accccttccttaagatgggatgagacaccaggtcgtgcaaaaggaagtgagactcctggt
gcaaccccaggctcaaaaatatgggatcctacacctagtcatacacctgcgggagctgct
actcctggacgaggcgatacaccaggccatgcgacaccaggccacggaggtgcaacttcc
agtgctcgtaaaaatagatgggacgagacccccaaaaccgagagagatactcctgggcat
ggaagtggatgggctgagactccccgaacagatcgaggtggagattcaattggtgaaaca
ccgactcctggagccagtaaaagaaagtcacgttgggatgaaacaccagctagtcagatg
ggtggaagcactcctgttctgacccctggaaaaacacccattggcacaccagccatgaac
atggctacccctactccaggtcacataatgagtatgactccagaacagcttcaggcttgg
cggtgggagagagagattgatgaacgcaatcgcccactgtctgatgaagaattggatgct
atgttcccagaaggatataaggtacttccgccacctgctggctatgttcctattcggact
ccagctcgaaagctgacagcgactccaacacctttgggtggtatgactggtttccatatg
caaactgaagatagaactatgaaaagtgttaatgaccagccatctggaaatcttccattt
ttaaaacctgacgacattcagtactttgataaactattggttgatgttgatgaatcaaca
cttagtccagaagagcaaaaagagagaaaaataatgaagttgcttttaaaaattaagaat
ggaacacctccaatgagaaaggctgcattgcgtcagattactgataaagctcgtgaattt
ggagctggacctttgtttaatcagattcttcctctactgatgtctcctacacttgaggat
caagagcgtcatttacttgtaaaagttattgatagaatattatacaaacttgatgactta
gtacggccatatgtacacaagattcttgtggtcattgaaccactgttgattgatgaggat
tactatgctagagtggaaggccgagagattatttctaatttggcaaaggctgctggtttg
gctactatgatctctaccatgagacctgatatagataacatggatgaatatgttcgtaac
acaacagctagagcttttgctgttgtagcctctgccctgggcattccttctttattgccc
ttcttaaaagctgtgtgcaaaagcaagaagtcttggcaagcaagacacactggtattaag
atagtacagcagattgctattcttatgggctgtgccattttgccacatctcagaagttta
gttgaaatcattgaacatggtcttgtggatgaacagcagaaagttcggacgatcagtgct
ttggccattgctgccttggctgaagcagcaactccttatggtattgaatcttttgactct
gtgctaaaacctctttggaagggtatccgccaacacagaggaaagggtttggctgctttc
ttaaaggctattgggtaccttattcctctcatggatgcagaatatgccaactactatact
agagaagtgatgttaatccttattcgagaattccaatctcctgatgaagaaatgaagaaa
attgtactgaaggtggtaaaacagtgctgtgggacagatggtgtagaagccaactacatt
aaaacagagattcttcctcctttctttaaacatttctggcagcacagaatggctttggat
agaagaaattaccgacagttagtcgatactactgtggagttggcaaacaaagtaggtgca
gcagaaattatatccaggattgtggatgacctgaaagatgaagccgaacagtaccgaaaa
atggtgatggaaacaattgagaaaatcatgggcaacctgggagcagcagacattgatcat
aaacttgaagaacaactgattgatggcattctttacgctttccaagaacagactacagag
gactcagtaatgttgaatggctttggcacagtggtcaatgctcttggcaaacgagtcaaa
ccatacttgcctcagatttgtggtacagttttgtggcgcttaaataacaaatcagcaaaa
gttagacaacaggcagctgacttgatttctcgaactgctgtcgtcatgaaaacttgtcaa
gaggaaaaactgatggggcacttgggtgtggtgttgtatgaatatttgggtgaagagtat
cctgaagtgttgggaagcattcttggagcactgaaggctattgtaaatgtaataggtatg
cataagatgaccccaccaattaaagatctgctgcctagacttacccccatcttaaagaac
aggcatgaaaaagtacaagagaattgtattgatcttgttggacgtattgctgacagggga
gctgaatatgtgtctgcacgtgagtggatgaggatttgctttgaacttttagagctctta
aaagctcacaaaaaagctatccgtagagctacagtcaacacatttggttatattgcaaag
gccattggccctcacgatgtattggctacgcttttaaacaacctcaaagttcaagaaagg
cagaacagagtttgtaccactgtagcaatagctattgttgctgaaacgtgttcacccttt
acagtactccctgccttaatgaatgaatacagagttcctgagctgaatgttcaaaatgga
gtgttgaaatcactttccttcttgtttgaatatattggtgaaatgggaaaagactacatt
tatgctgtaacaccattacttgaagatgctttaatggatagggaccttgtacacaggcag
acggctagtgcggtggtacagcacatgtcacttggggtttacggatttggttgtgaagat
tctctgaatcacttgttgaactatgtatggcccaatgtgtttgagacatctccccatgta
atccaggcagttatgggagccctggagggcctaagagttgctattggaccatgtagaatg
ttgcagtattgcttacagggtctgtttcacccagcacggaaagtcagagatgtgtattgg
aaaatttacaactccatctacattggttcacaggacgctctcatagcacattacccaaga
atctacaatgatgataagaacacctatattcgttatgaacttgactatatcttgtaa

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