Castor canadensis (American beaver): 109681925
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Entry
109681925 CDS
T04791
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109681925 (Sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccan03041
]
109681925 (Sf3b1)
03036 Chromosome and associated proteins [BR:
ccan03036
]
109681925 (Sf3b1)
Spliceosome [BR:
ccan03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109681925 (Sf3b1)
Complex B
109681925 (Sf3b1)
Complex C
U2 SnRNP specific factors
109681925 (Sf3b1)
Chromosome and associated proteins [BR:
ccan03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
109681925 (Sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
109681925
NCBI-ProteinID:
XP_020012477
UniProt:
A0A8B7U037
LinkDB
All DBs
Position
Unknown
AA seq
1338 aa
AA seq
DB search
MRGEQSPLFFSVAVAATSGSSWERQFRLCVRLNKMAKIAKTHEDIEAQIREIQGKKAALD
EAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYHA
PVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPK
MNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQ
TPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAA
TPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGET
PTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAW
RWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHM
QTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKN
GTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDL
VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRN
TTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSL
VEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAF
LKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYI
KTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRK
MVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVK
PYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEY
PEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG
AEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQER
QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI
YAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHV
IQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPR
IYNDDKNTYIRYELDYIL
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggagagcagtccccgctatttttctccgtggcggtggcggcgacgagcggaagt
tcttgggagcgccagttccgtctgtgtgttcgactgaacaaaatggcgaagatcgccaag
actcacgaagatattgaagcacagattcgagaaattcaaggcaagaaggcagctcttgat
gaagctcaaggagtgggccttgattccacaggttattatgaccaggaaatttatggtggg
agcgatagcagatttgctggatatgtaacatcaattgctgcaactgaacttgaagatgat
gacgatgactactcatcatctacaagtttgcttggtcagaagaagcctggatatcatgcc
cctgtggcactgctcaacgacataccacagtcaacagaacagtatgatccatttgctgag
caccgacccccaaagattgcagaccgggaagatgaatacaaaaagcacaggcggaccatg
ataatttccccagagcgtcttgatccttttgcagatggagggaagacccctgatcctaaa
atgaatgctagaacatacatggatgtaatgcgagaacagcatttgactaaagaagagaga
gaaattaggcaacaactagcagaaaaagctaaagctggagaactaaaagtcgtcaatgga
gcagcagcatcccagcctccctcaaaacgtaaacggcgctgggatcaaacagccgatcag
actcctggtgccactcctaaaaagctatcaagttgggatcaggcagaaactcctgggcat
accccttccttaagatgggatgagacaccaggtcgtgcaaaaggaagtgagactcctggt
gcaaccccaggctcaaaaatatgggatcctacacctagtcatacacctgcgggagctgct
actcctggacgaggcgatacaccaggccatgcgacaccaggccacggaggtgcaacttcc
agtgctcgtaaaaatagatgggacgagacccccaaaaccgagagagatactcctgggcat
ggaagtggatgggctgagactccccgaacagatcgaggtggagattcaattggtgaaaca
ccgactcctggagccagtaaaagaaagtcacgttgggatgaaacaccagctagtcagatg
ggtggaagcactcctgttctgacccctggaaaaacacccattggcacaccagccatgaac
atggctacccctactccaggtcacataatgagtatgactccagaacagcttcaggcttgg
cggtgggagagagagattgatgaacgcaatcgcccactgtctgatgaagaattggatgct
atgttcccagaaggatataaggtacttccgccacctgctggctatgttcctattcggact
ccagctcgaaagctgacagcgactccaacacctttgggtggtatgactggtttccatatg
caaactgaagatagaactatgaaaagtgttaatgaccagccatctggaaatcttccattt
ttaaaacctgacgacattcagtactttgataaactattggttgatgttgatgaatcaaca
cttagtccagaagagcaaaaagagagaaaaataatgaagttgcttttaaaaattaagaat
ggaacacctccaatgagaaaggctgcattgcgtcagattactgataaagctcgtgaattt
ggagctggacctttgtttaatcagattcttcctctactgatgtctcctacacttgaggat
caagagcgtcatttacttgtaaaagttattgatagaatattatacaaacttgatgactta
gtacggccatatgtacacaagattcttgtggtcattgaaccactgttgattgatgaggat
tactatgctagagtggaaggccgagagattatttctaatttggcaaaggctgctggtttg
gctactatgatctctaccatgagacctgatatagataacatggatgaatatgttcgtaac
acaacagctagagcttttgctgttgtagcctctgccctgggcattccttctttattgccc
ttcttaaaagctgtgtgcaaaagcaagaagtcttggcaagcaagacacactggtattaag
atagtacagcagattgctattcttatgggctgtgccattttgccacatctcagaagttta
gttgaaatcattgaacatggtcttgtggatgaacagcagaaagttcggacgatcagtgct
ttggccattgctgccttggctgaagcagcaactccttatggtattgaatcttttgactct
gtgctaaaacctctttggaagggtatccgccaacacagaggaaagggtttggctgctttc
ttaaaggctattgggtaccttattcctctcatggatgcagaatatgccaactactatact
agagaagtgatgttaatccttattcgagaattccaatctcctgatgaagaaatgaagaaa
attgtactgaaggtggtaaaacagtgctgtgggacagatggtgtagaagccaactacatt
aaaacagagattcttcctcctttctttaaacatttctggcagcacagaatggctttggat
agaagaaattaccgacagttagtcgatactactgtggagttggcaaacaaagtaggtgca
gcagaaattatatccaggattgtggatgacctgaaagatgaagccgaacagtaccgaaaa
atggtgatggaaacaattgagaaaatcatgggcaacctgggagcagcagacattgatcat
aaacttgaagaacaactgattgatggcattctttacgctttccaagaacagactacagag
gactcagtaatgttgaatggctttggcacagtggtcaatgctcttggcaaacgagtcaaa
ccatacttgcctcagatttgtggtacagttttgtggcgcttaaataacaaatcagcaaaa
gttagacaacaggcagctgacttgatttctcgaactgctgtcgtcatgaaaacttgtcaa
gaggaaaaactgatggggcacttgggtgtggtgttgtatgaatatttgggtgaagagtat
cctgaagtgttgggaagcattcttggagcactgaaggctattgtaaatgtaataggtatg
cataagatgaccccaccaattaaagatctgctgcctagacttacccccatcttaaagaac
aggcatgaaaaagtacaagagaattgtattgatcttgttggacgtattgctgacagggga
gctgaatatgtgtctgcacgtgagtggatgaggatttgctttgaacttttagagctctta
aaagctcacaaaaaagctatccgtagagctacagtcaacacatttggttatattgcaaag
gccattggccctcacgatgtattggctacgcttttaaacaacctcaaagttcaagaaagg
cagaacagagtttgtaccactgtagcaatagctattgttgctgaaacgtgttcacccttt
acagtactccctgccttaatgaatgaatacagagttcctgagctgaatgttcaaaatgga
gtgttgaaatcactttccttcttgtttgaatatattggtgaaatgggaaaagactacatt
tatgctgtaacaccattacttgaagatgctttaatggatagggaccttgtacacaggcag
acggctagtgcggtggtacagcacatgtcacttggggtttacggatttggttgtgaagat
tctctgaatcacttgttgaactatgtatggcccaatgtgtttgagacatctccccatgta
atccaggcagttatgggagccctggagggcctaagagttgctattggaccatgtagaatg
ttgcagtattgcttacagggtctgtttcacccagcacggaaagtcagagatgtgtattgg
aaaatttacaactccatctacattggttcacaggacgctctcatagcacattacccaaga
atctacaatgatgataagaacacctatattcgttatgaacttgactatatcttgtaa
DBGET
integrated database retrieval system