Castor canadensis (American beaver): 109682659
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Entry
109682659 CDS
T04791
Symbol
Vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan04140
Autophagy - animal
ccan04148
Efferocytosis
ccan05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109682659 (Vps39)
04148 Efferocytosis
109682659 (Vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109682659 (Vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccan04131
]
109682659 (Vps39)
Membrane trafficking [BR:
ccan04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
109682659 (Vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
DUF7576
Beta-prop_RIG_2nd
WD40_like
Lgl_C
SAM_CEP-1_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
109682659
NCBI-ProteinID:
XP_020013619
UniProt:
A0A8B7U1Y0
LinkDB
All DBs
Position
Unknown
AA seq
878 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLESNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTKTGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTLEPRLLVQSIELQRPRFITSGGLNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLSFLIENFKGLAIPYLEHIIHVW
EEIGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEYRQKLLMFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTRMAEEYCHKHYDQNK
DGHKDVYLSLLRMYLSPPSIHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKECEEGWREEL
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgctttcgagccggtgccgatcctagaaaagctgcctctgcagatcgactgt
ctggctgcctgggaggaatggcttcttgttggaaccaaacaaggacatcttcttctctat
aggattcggaaagatgttggttgcaacaggtttgaagtgacactagagaaatccaataag
aacttctccaaaaagattcagcagatccatgtggtttcccagtttaagattctagtcagc
ttgttagaaagcaacatttatgtccatgacctattgacatttcaacagatcactacagtt
tcaaaggcaaagggagcatcactgttcacatgtgacctccagcacactaagactggtgag
gaggtattgcggatgtgtgtggcagtgaaaaagaaactgcagctctatttctggaaggac
agggaatttcatgaactgcagggggacttcagtgtgcctgatgtgccaaagtccatggca
tggtgtgaaaactctatctgtgtgggcttcaagagggactactacctgataagggtggat
ggaaaggggtccatcaaagagctctttccgacaggaaaacagctggagcccttagttgca
cctctggcagatggaaaagtggcggtgggtcaggacgatctcaccgtggtgctcaatgag
gaaggcatctgcacacagaagtgtgccctgaactggacagacataccagtggccatggag
caccagcctccgtacatcattgcagtgttgcctcgatacgtggagatccggacattggaa
ccacggcttttggtccagagcattgagctgcaaagaccacgtttcatcacctcgggggga
ttaaacattatttatgtggccagcaatcattttgtttggagactcattcctgtccccatg
gcgacccaaatccagcagctgctccaggacaagcagtttgagttggctctgcagctcgca
gaaatgaaagatgattccgacagtgaaaagcagcaacaaatccatcacatcaagaacttg
tatgccttcaaccttttctgccagaagcgctttgacgagtccatgcaggtctttgctaag
cttggcacagatcccactcacgtgatgggcctgtaccctgacctgctgcccacagactac
aggaagcagttgcagtaccctaacccgctgcctgtgctctctggggctgagttggagaag
gctcacttagctctgattgactacctgacacagaaacgaagtcaattagtaaagaagctg
aatgactctgaccaccagtctagcacttcccccctcatggaaggcactcccaccatcaaa
tccaagaagaagttgttgcaaatcattgacaccaccctgctcaagtgctacctacatacg
aacgtggccctggtggcccccttgctgcgcctggagaacaatcactgccatattgaggag
agtgagcatgtgctgaagaaggctcataagtacagtgagctgataatcctgtatgagaag
aaggggctccatgagaaagctctgcaggtgctggtggaccagtccaagaaagcaaactcc
ccactgaaaggccatgagaggactgtgcagtatctccagcacctgggcacagaaaacctg
catttaattttttcctactcagtgtgggtgctgagagacttcccagaagatggcctgaag
atatttaccgaagatcttccagaggtggaatctctaccacgagatcgtgtgcttagcttc
ttaatagagaattttaagggtctcgctattccttatctggagcacatcatccacgtgtgg
gaggagataggctcccggttccacaactgcctaatccagctgtactgtgagaaggtgcaa
ggtctgatgaaggagtacctcctgtccttccctgcaggcaaaaccccagtccctgctgga
gaggaagagggtgagctgggagaatacaggcaaaagttgctcatgttcttggagatttcc
agctactatgatccaggccggctcatctgtgactttccttttgatggcctcttagaagaa
cgagctctcctgctggggcgcatgggcaaacatgaacaagctctcttcatctatgtccac
gtcttaaaggatacaaggatggctgaggagtactgccacaaacactatgaccaaaacaag
gatggccacaaagatgtgtatctgtccctgcttcggatgtacctgtcgccccctagcatt
cactgcctggggccaatcaagctggaacttctagagccacaggccaacctccaggctgcc
ttgcaggtcttggaactgcaccacagcaaactggacaccaccaaggctatcaaccttctg
ccagcaaacactcagatcaatgacatacgcatctttttggaaaaggtcttggaagaaaat
gcacaaaagaaacggttcaatcaagtgctcaagaaccttcttcatgctgagttcctgagg
gttcaggaagagcggattttgcaccagcaggtgaagtgcatcatcacagaggagaaggtg
tgcatggtgtgtaagaagaagattggaaacagtgcatttgcaagataccccaatggagtg
gtggtgcattacttctgttccaaagagtgtgaagaaggctggagagaagagctctga
DBGET
integrated database retrieval system
