Castor canadensis (American beaver): 109683019
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Entry
109683019 CDS
T04791
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109683019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccan03041
]
109683019
Enzymes [BR:
ccan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109683019
Spliceosome [BR:
ccan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109683019
Complex C
U5 SnRNP specific factors
109683019
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
Helicase_PWI
WHD_SNRNP200
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
109683019
NCBI-ProteinID:
XP_020014234
UniProt:
A0A8B7U3V4
LinkDB
All DBs
Position
Unknown
AA seq
1714 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKVSP
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtaaccgcccgcagcctgcagtacgagtacaaggcgaactcgaatcttgtt
ctccaagctgaccgctccctcattgaccggacccgccgggatgaacccactggagaggtg
ctgtcattggttgggaagttggagggcacccgtatgggagataaggctcaacggaccaaa
cctcaaatgcaggaggaaagaagagccaagcgaagaaagcgtgatgaggaccgccatgac
atcaacaagatgaagggttatactctgctgtcagagggcattgatgagatggtgggcatc
atctacaaacccaaaactaaggagacccgggagacctatgaggtgcttctcagcttcatc
caggctgctcttggggaccagccacgtgatatcctttgtggggcagccgatgaagttcta
gctgtcctgaagaacgaaaagcttcgtgacaaggaaaggcgaaaggagattgacctgctt
ttgggtcagacagatgataccagataccatgtgctagtgaacttgggcaaaaagatcaca
gactatggtggagacaaggaaatccaaaatatggatgacaacattgatgagacctacgga
gtgaatgtgcagtttgagtctgatgaagaggaaggtgatgaagatgtatatggagaggtt
cgagaagaggcatctgatgatgatatggaaggggatgaggctgttgtgcgctgtaccctc
tcagctaatcttgtggcctcaggtgaactgatgagttccaagaagaaagatttacacccc
cgggatattgatgcattctggctgcagcggcagctcagtcgtttctatgatgatgctatt
gtgtcacagaagaaagcagatgaagtgttggagattttgaagacggcaagtgatgaccga
gaatgtgagaaccaattggttctgctccttggctttaacacttttgattttattaaagtg
ttacggcagcacaggatgatgattttatattgtaccttactggccagtgctcagagtgaa
gctgaaaaggagaggatcatgggaaagatggaagctgatccagagctatccaaattcctc
taccagctccatgaaactgagaaggaggatttgatccgagaggaaaggtcacggagagag
cgagttcgtcagtcccgaatggatacagatttggaaaccatggatctggaccagggtgga
gaggcattggctccacggcaggtcttagacttagaggacctagttttcactcaagggagt
cacttcatggctaacaaacgctgtcagcttcctgatggatccttccgtcgccagcgtaag
ggctatgaagaggtgcatgtccctgctctgaagcccaaacccttcggctcagaagaacaa
ctgcttccagtggagaagctgccgaaatatgcccaggctggatttgagggcttcaagaca
ctgaatcggatccagagtaaactctaccgtgctgccctggaatcagatgagaatctgctg
ctgtgtgctcctactggtgctgggaagaccaacgtggccctgatgtgtatgcttcgagag
atagggaaacacataaacatggatggcactatcaacgtggatgacttcaagatcatctac
attgctcccatgaggtccttggtgcaggaaatggtgggaagttttggaaagcgcctggcc
acttatggcatcactgttgctgaactgactggggaccaccagctgtgcaaggaggagatc
agtgccacacagatcatcgtctgtacgcccgaaaagtgggacatcatcacccgcaagggc
ggtgagcgtacctacactcagctggtgcggcttattgtcctggatgagatccatcttctc
catgatgacagaggccctgtcttagaagctttggtggccagggccattcgaaacattgag
atgacccaagaggatgtccggctcattggtctcagtgctaccctccctaactatgaagac
gtggccacctttctgcgtgtcgaccctgccaagggcctcttctactttgacaatagcttc
cgcccagtgcctctggaacagacgtatgtgggcatcacagagaaaaaagctatcaagcgt
ttccagatcatgaatgaaatagtttatgaaaaaattatggaacatgctggaaaaaatcag
gtgctggtgtttgtccattctcggaaggagactgggaagacggcccgggccatccgggat
atgtgcctggagaaggacactttaggtctgtttctgcgagagggctctgcctccacggag
gtccttaggacggaagcagaacagtgcaagaacctggagctgaaggatcttcttccttat
ggctttgctattcatcatgcaggcatgaccagagttgatagaacacttgtggaggatctt
tttgctgataaacatattcaggttttagtttccactgcaactctggcctggggtgtgaat
ctccctgcccatacagtcatcataaaaggcacccaagtgtacagtccagagaaggggcgt
tggacagaactgggagcactggacattttgcagatgctgggacgagctggacgaccccag
tatgacaccaaaggcgaaggcattctcatcacatctcatggggagctacagtactacctg
tctctccttaaccagcagcttcctattgagagccagatggtatcaaagctgcctgacatg
cttaatgcggaaattgtgctggggaatgtccagaatgcaaaggatgcagtgaattggctg
ggttatgcctacctgtatattcgaatgctccgatccccgactctctatggcatctctcat
gatgacctcaagggagatcccttgctggatcagcgccgactagatctggttcacactgct
gccttgatgcttgacaagaacaatttggtcaagtatgacaagaagacaggcaacttccag
gtgacagaactgggccgtatagccagccactattacattaccaatgatacagtgcagacc
tataaccagctgctgaaacccactctgagtgagattgagcttttccgagttttctcattg
tcctcagagtttaagaacatcactgtgagagaggaagagaagctggagctacagaagttg
ctggagagggtgcccatccctgtaaaggagagcattgaggaacccagtgcaaagatcaat
gtgcttctccaagccttcatctcacagttgaaattggagggctttgcattgatggctgat
atggtgtatgttacacagtcggctggtcggttgatgcgggcaatctttgaaatagtcctg
aatcgaggttgggcacagcttacagacaagactctgaacctctgcaagatgatcgacaaa
cgcatgtggcagtccatgtgtcctctgcgccagttccgtaaactccctgaggaggtagtg
aagaagattgagaagaaaaacttcccctttgagcgtctgtacgacttgaatcataatgag
ataggggagcttattcgcatgccaaaaatggggaagaccatccacaagtacgtccacctg
ttccctaagttggagttgtcagtgcacctgcagcctatcacacgttccaccttgaaagtg
gagctgaccatcacgccagatttccagtgggatgaaaaggtccatggttcatcagaggca
ttctggattctggtggaggatgtggacagtgaggtgatactgcaccatgaatattttcta
ctcaaggccaaatatgcccaggatgagcacctcattacattctttgtgcctgtcttcgaa
ccgctgccccctcagtacttcatccgtgtggtgtctgatcgctggctctcttgtgagact
cagctgccagtctctttccggcacctgatcctaccagagaagtacccacctccaacggaa
ctgctggacctgcagcccctgcctgtgtctgctctgagaaacagtgcctttgagagcctt
taccaggataaatttcctttcttcaatcccatccagacccaagtgtttaacaccgtgtac
aatagtgatgataatgtttttgtgggggcccccactggcagtggaaagaccatttgtgca
gagtttgccatcctgcgaatgttgctgcagaactcagaggggcgctgtgtctacattact
cccatggaggccctggcagagcaggtatacatggactggtatgagaagttccaagacagg
ctcaacaagaaggtagtgctcctgacgggggaaaccagcacggacctgaagcttctgggc
aaaggcaacatcatcatcagcacacctgagaagtgggacattctttctcggcggtggaag
cagcgcaagaatgtccagaacatcaacctctttgtggtggatgaggtccaccttattggg
ggcgagaatgggcctgtcttagaagtgatctgctcccgcatgcgctacatctcctcccag
attgagcgacccattcgcattgtggctctcagctcttcactctcaaacgccaaggatgtg
gctcactggctgggctgcagtgccacctccaccttcaacttccaccctaatgtgcgccct
gtgcctttggagttgcacatccagggcttcaatatcagccatacacagactcgtctgctt
tccatggccaagcctgtgtatcatgctatcaccaagcactcacccaagaagcctgtcatt
gtttttgtcccatctcgaaagcagacccgcctcactgccattgacatcctcaccacctgt
gcagcagatatccagcggcagaggttcttgcactgcactgagaaggacctgattccatac
ctggagaagctaagtgacagcacgctgaaggagaccctgttgaatggggtcggctacctg
catgaggggctcagccccatggagcgacgcctggtggagcagctcttcagctcaggggct
atccaggtggtggtggcttctcggagtctctgctggggcatgaatgtggctgcccacttg
gtgatcatcatggacacccagtactacaatggcaagatccatgcttatgtggattacccc
atctatgacgtgcttcagatggtgggccatgccaaccgtcctctgcaagatgacgagggg
cgctgtgttatcatgtgtcaaggctccaaaaaggtcagtccttga
DBGET
integrated database retrieval system
