Castor canadensis (American beaver): 109684107
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Entry
109684107 CDS
T04791
Symbol
Prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109684107 (Prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccan03041
]
109684107 (Prpf4)
Spliceosome [BR:
ccan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
109684107 (Prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
NBCH_WD40
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
Ge1_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
109684107
NCBI-ProteinID:
XP_020015925
UniProt:
A0A8B7UDC7
LinkDB
All DBs
Position
Unknown
AA seq
560 aa
AA seq
DB search
MASSRTSSTATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIE
AGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITL
FGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWI
ANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSP
NSKMLATACWSGLCKLWSVPDCNPLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAA
DGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQ
EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYH
IATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPG
WSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAEHFTSCILAEVLWKKRVPSL
PQGPLCSWKESNTQPDPWLV
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcacgaacctcctctacggccaccaaaactaaagcacctgatgacttagtc
gcacctgttgtgaagaaaccacatatctattatggaagtctggaagagaaggagagggaa
cgtctggccaaaggagagtctgggattttgggaaaagaagggcttaaagcaggaatcgaa
gcaggaaatattaatataacctctggagaggtatttgaaattgaagagcatatcagtgaa
cgacaggcagaagtattggctgaatttgagagaaggaagcgggccaggcaaatcaacgtt
tccacagatgactcagaggtcaaggcttgccttagagccttgggggaacccatcacactt
tttggagagggccctgctgaaagaagagaaaggttaagaaatatcctctcagtggttggt
actgatgcactaaaaaagaccaaaaaagatgatgagaaatctaagaagtccaaagaagag
tatcagcaaacctggtaccatgaaggaccaaacagcctgaaggtggctagattgtggatt
gctaattattcactgcccagggcaatgaaacgtttggaagaggcccgtctccataaagag
attcctgagacaactaggacctcccagatgcaagagctgcacaaatctctccggtctttg
aataatttctgcagccagattggggatgatcggcctatctcctattgtcattttagtccc
aattccaaaatgctggccacagcctgttggagtgggctttgcaagctctggtctgttccc
gactgcaaccccctgcacactctccgaggccataatacaaatgtaggagcaattgtattc
catcccaagtctactgtctcattggaccaaaaagacgttaacctggcatcttgtgctgct
gatggttctgtgaaactttggagtcttgacagcgatgagccagtggcagatattgaaggt
catacagtgcgtgtggcccgagtaatgtggcatccatcaggacgtttcctggggaccacc
tgctatgaccgttcgtggcgcttatgggatttggaggctcaagaagagatcctgcatcag
gaaggtcacagcatgggtgtatatgacattgccttccatcaagatggctctttggctggc
actgggggactggatgcatttggtcgagtttgggacctgcgcacaggacgttgtatcatg
ttcctagaaggccacctgaaggaaatctatggaataaatttctcccccaatggctaccac
attgcaactggcagtggtgacaatacctgcaaagtgtgggaccttcgacagcggcgttgc
gtctatactatccctgcccatcagaatttagtgactggtgtcaagtttgagcctatccat
gggaacttcttgctcactggtgcctatgataacacagccaagatctggacccacccaggc
tggtccccactgaagacgctggctggccacgaaggcaaagtgatgggcctagacatttct
tctgatgggcagcttatagccacttgctcatatgacaggaccttcaagctctggatggct
gaacacttcacaagctgcattctggcagaggtcttgtggaagaagcgcgtaccttccctg
ccgcagggccctctctgttcctggaaagaatcaaacacacagcctgatccctggcttgta
tga
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