Castor canadensis (American beaver): 109684931
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Entry
109684931 CDS
T04791
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03013
Nucleocytoplasmic transport
ccan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109684931 (Upf1)
03015 mRNA surveillance pathway
109684931 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccan03019
]
109684931 (Upf1)
Enzymes [BR:
ccan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109684931 (Upf1)
5.6.2.5 RNA 5'-3' helicase
109684931 (Upf1)
Messenger RNA biogenesis [BR:
ccan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109684931 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
109684931 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
109684931
NCBI-ProteinID:
XP_020017126
UniProt:
A0A8B7UC71
LinkDB
All DBs
Position
Unknown
AA seq
1135 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGAGG
PGGAGGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDSLTQWPDYGDEIAIELRSSVGAPV
EVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRF
TAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS
NIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDE
TGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATE
PECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYR
MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTS
YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI
ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQP
LWNHLLSYYKEQRALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIP
GSVYDRSSQGRPSNVYFQTHDQIGMIGAGPGHVAAMNIPIPFNLVVPPMPPPAYFGQANG
PAAGRGTPKSKTGRGGRQKNRFGLPGPSQANLPNSQASQDVTSQPFSQGALTQGYISMSQ
PSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacacggaagag
gccgagttgctgggcgccgatacgcagggctccgagttcgagttcacggatttcacgctc
cccagccagacgcagacgccccccggcggtcccggaggccccggcggcggcgcgggaggc
ccgggcggcgcgggcggcgcgggcgcggcggccggacagctcgacgcgcaggttggacct
gagggcatcctgcagaatggggctgtggacgacagtgtggccaagaccagccagctgctg
gccgagctgaactttgaagaagatgaagaagacacctactacacgaaggacctccccatc
cacgcctgcagctactgcggaatccatgaccctgcctgcgtggtttactgcaacaccagc
aagaagtggttctgcaacggccgtggaaatacttctggcagccacatcgtgaatcacctc
gtgagggcaaagtgcaaagaggtgactctgcacaaggacgggccgctgggggagacggtg
ctggagtgctacaactgcggctgtcgcaatgtcttcctcctgggcttcattcctgccaag
gccgactcggtcgtggtgctgctctgcaggcagccctgtgccagccagagcagcctcaag
gacatcaactgggacagctcacagtggcagccgctgatccaggaccgctgcttcctgtcc
tggctggtcaagatcccgtctgagcaggagcagctgcgcgcacggcagatcactgcccag
cagatcaacaagctggaggaactgtggaaggaaaacccttcggccaccttggaggacctg
gagaagccgggggtggacgaggagccgcagcacgtgcttctgcgctatgaggacgcctac
cagtaccagaacatcttcgggccgctggtcaagctggaggccgactacgacaagaagctg
aaggagtcgcagactcaagataacatcactgtcaggtgggacctgggccttaacaagaag
agaattgcctacttcactctgcccaagactgactctggtaatgaggatttagtcataatt
tggttaagagacatgcggctcatgcagggggatgagatctgcctgaggtacaagggggac
ctcgcgcccctctggaaagggatcggccacgtcatcaaggtccctgacagcttgactcag
tggccagattacggtgacgagattgccatcgagctccgcagcagcgtgggtgcacccgtg
gaggtcactcacaacttccaggtagacttcgtgtggaagtccacctcgtttgacaggatg
cagagcgcgctgaagacgttcgccgtggacgagacctctgtgtcgggctacatctaccac
aagctgctcggccacgaggtggaggacgtgataatcaagtgccagctgcccaagcgcttc
acggcgcaggggctcccggacctcaaccactctcaggtgtacgccgtgaagacggtgctg
cagagaccactgagcctcatccagggcccaccgggcactggcaagacggtgacatcggcc
accatcgtctaccacctggcacggcagggcaatggccccgtgctggtgtgcgcacccagc
aacatcgccgtggatcagctgacggagaagatccaccagacggggctgaaggtcgtgcgc
ctgtgcgccaagagccgtgaggccatcgactccccagtgtctttcctggccctgcacaac
cagatcaggaacatggacagcatgcccgagttgcagaagttgcagcagctcaaggacgag
accggggagctgtcgtcagctgacgagaagcggtaccgcgccctcaagcgcacggccgag
cgggagctgctcatgaacgcagatgtcatctgctgcacgtgcgtgggcgccggtgacccg
aggttggccaagatgcagttccgctccatcctcatcgacgagagcacgcaggccaccgag
cccgagtgcatggtacccgtggtcctcggggccaagcagctgatcctggtgggcgaccac
tgccagctggggccggtggtgatgtgcaagaaggcggccaaggctggcctgtcgcagtcc
ctcttcgagcgcctggtggtgctggggatccggcccatccgcctgcaggtccagtaccgg
atgcaccccgccctcagcgccttcccgtccaacatcttctatgagggctcgctgcagaat
ggtgtcaccgcagcggaccgtgtgaagaaggggttcgactttcagtggccccagcctgac
aagcctatgttcttctacgtgacccagggccaggaggagatcgccagctcaggcacgtcc
tacctgaacaggacggaggccgccaacgtggagaagatcaccacgaagctgctgaaggcg
ggcgccaagcccgaccagatcggcatcatcacgccgtacgagggccagcgctcctacctg
gtgcagtacatgcagttcagcggctccctgcacaccaagctgtaccaggaggtggagatc
gccagcgtggacgccttccaggggcgtgagaaggacttcatcatcctctcctgcgtgcgg
gcaaacgagcaccaaggaatcgggttcctaaacgacccccggcgtctcaacgtggcgctg
accagagccaggtacggtgtgatcatcgtgggcaaccccaaggccctgtcgaagcagccg
ctgtggaaccatctcctgagctactacaaggagcagcgggcgctggtggaggggccgctc
aacaacctgcgggagagcctcatgcagttcagcaagccccgcaagctggtcaacaccgtc
aaccctggggcccggttcatgacaacagccatgtatgacgcccgggaggccatcatcccc
gggtccgtgtatgaccgcagcagccagggccggccctcgaacgtgtacttccagacgcac
gaccagatcggcatgatcggcgcgggccccggccacgtggctgcaatgaacattcccatc
ccgttcaacctggtcgtgccgcccatgccgccgccggcctacttcggacaagccaacggc
ccggccgccggccgcggcaccccaaaaagcaagaccggccgtgggggccgccagaagaac
cgcttcgggcttcccgggcccagccaggccaacctccccaacagccaggccagccaggac
gtgacgtcgcagcccttctcacagggcgccctgacgcagggctacatctccatgagccag
ccgtcccagatgagccagcccggcctctcccagcccgagctgtcgcaggacagttacctt
ggtgacgagtttaaatcacagattgatgtggcgctgtcacaagactccacataccaggga
gagcgggcgtaccagcacggcggggtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
