Castor canadensis (American beaver): 109684966
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Entry
109684966 CDS
T04791
Symbol
Col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
109684966 (Col13a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccan00536
]
109684966 (Col13a1)
Glycosaminoglycan binding proteins [BR:
ccan00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109684966 (Col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109684966
NCBI-ProteinID:
XP_020017190
UniProt:
A0A8C0XUQ1
LinkDB
All DBs
Position
Unknown
AA seq
713 aa
AA seq
DB search
MVAERARKAAAAGARGPGELGAPGTVALAERCARLPSPGSCGLLALALCSLALSLLAHFR
TAELQARVLRLEAERGEQQMETAILGRVNQLLDEKWKLHSRRRREAPKMSSGCNCPPGPP
GPTGRPGLPGDKGAIGMPGRVGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPG
YPGPKGEMGLPGSRGQPGPQGQKGEKGQCGEYPHREYLSSTLAALRSNQIITLKLLPLLN
SVRLAPPPVIKRRTFQGEQGQTGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGP
KGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGSPGIKGEKGAAGSPGLS
GLLGQKGEKGDAGNSTGGSKGEPGSPGLPGPPGPKGEAGVDGQVGPPGKQGDKGQPGAAG
EQGPAGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQK
GEIGLPGPPGHDGEKGPRGKPGDMGPAGPQGLPGKDGPPGIKGETGQPGSPGEKGEKGET
GQAGSPGEKGEAGEKGEPGAEVPGPPGPEGPPGLPGLQGVPGPKGEAGLDGAKGEKGAQG
EKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPG
LHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggtagcggagcgcgctcgcaaagcggcagcggcgggtgcccgcggccctggagagctg
ggcgcgccgggcacggtggcactggcggagcgctgcgcgcggttgcccagcccagggtcg
tgcgggctgctggcgctggccctgtgctcgctggcgctcagcctgctcgctcattttcgg
acggcggagctgcaggcccgggtactgcgcctggaagcggagcgcggggagcagcaaatg
gagacggctattttgggacgagtcaaccaactgctggacgagaaatggaagctccattca
cgcaggcgccgggaggccccaaagatgtcttcaggatgtaactgcccaccaggacctcct
ggccccactggaagacccggactcccaggggacaaaggtgccattgggatgcctggacgt
gtgggtgccccaggagatgccggaatgtccatcattggtccccgaggcccccctggtcaa
ccaggcactcgaggcttccccggatttccgggtcccattggcctggacggcaaaccgggc
taccctggaccaaaaggagagatgggcctgccaggttcccgaggacagccgggaccgcaa
ggacaaaaaggagaaaagggtcagtgtggcgagtacccacatcgggaatacctgagcagc
acgctagcagctctgcgctccaaccagataattaccctgaagctgctgcctctcctcaat
tcagtgcggctggctccacccccagtcattaaaaggcggaccttccagggtgagcagggc
cagactggcatccaaggcccaccaggaccaccaggtccccctggaccaagtggacctctg
gggcacccaggactgccaggacccatggggccgcctggcttacctgggcctcctggacca
aaaggagacccaggcatccaggggtaccatggccgcaagggagagcggggcatgccaggg
atgccgggcaagcatggagccaagggggctcctgggatcgcagtggctgggatgaagggt
gagccagggagtccaggcatcaagggtgagaagggggctgctggttcccctgggctctct
gggctccttggacaaaagggagaaaaaggtgatgctggcaactccactggaggaagcaag
ggtgaacctggttccccaggactccctgggcctccggggccaaagggagaagctggagtg
gatggccaggttgggcccccaggaaagcaaggagacaaggggcagcctggagcagctgga
gagcagggaccagctggccccaagggctccaagggagaacccgggaaaggagagatggtg
gattacaatggaaatatcaacgaggctctccaggagatccgaacattggccttgatgggg
cctcctggtcttcctgggcaaataggcccacctggagctccagggattccaggccagaag
ggagagattggactgccaggccctccaggacatgatggggaaaagggacctcgaggcaaa
ccaggagacatgggccctgcaggcccccaaggactcccaggaaaggatgggcctccagga
ataaagggagaaactggacaaccagggagcccgggagagaaaggagagaagggggagacg
ggacaagctggctcaccaggagagaaaggagaagccggggagaaaggtgaaccgggagca
gaggttcctgggccaccagggccagaggggcctcctggacttcccggcctccaaggtgtt
cctggaccaaagggggaagcaggcctagatggagcaaaaggagagaagggtgcacaagga
gaaaaaggagaccgagggcctctgggattacccggagcttcaggtttggacggcaggcct
gggccaccgggtactccaggaccaatcggagttccaggcccagcgggaccaaagggcgag
aggggcagcaaaggagacccagggatgacaggaccaacgggagcagctggacttcctggt
ttacatggaccacccggggacaaaggaaaccggggggagagggggaagaaaggctctaga
gggcctaaaggggataagggagaccaaggagcacctggattagatgccccctgtccgttg
ggtgaagacggcttaccagtccagggctgttggaacaagtga
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