Castor canadensis (American beaver): 109686884
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Entry
109686884 CDS
T04791
Symbol
Ythdc2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ccan
Castor canadensis (American beaver)
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccan03041
]
109686884 (Ythdc2)
Enzymes [BR:
ccan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109686884 (Ythdc2)
Spliceosome [BR:
ccan03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109686884 (Ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
nSTAND3
Ank
AAA_22
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
AAA_29
ABC_tran
T2SSE
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
109686884
NCBI-ProteinID:
XP_020020033
UniProt:
A0A8B7UKD1
LinkDB
All DBs
Position
Unknown
AA seq
1367 aa
AA seq
DB search
MEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLTHNT
KHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQVPVKRGE
SEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPCRI
FCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAG
DSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGSC
PVIHIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENTFK
PESQRQRTVPNVTEEYDVLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKDVD
AFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFASQVEQLISMGANVHSKASNGWMA
LDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGNDLSAEDRELLKAYHHSFDDEK
VDLDLIMHLLYNICHSCDAGAVLIFLPGYDEIVGLRDRILFDDKRFADHTHRYQVFMLHS
NMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVTML
KMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLL
APVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHLGK
MVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLRA
FQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNT
NSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPPANGQ
AAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSSFRAD
GIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSLFLRRMRAPSK
PWSQVDEASIRAIIAVLSTEEQCAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKSAA
DTEFSEESATVERVLMKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVKSTDSSSYPS
PCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRA
FWESSMVYLVFSVQGSGHFQGFSRMCSEIGREKSQDWGSAGLGGVFKVEWIRKESLPFQF
AHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKSTAD
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggaatttccttcttctttgaccagtactgaaagagcttttattcatcgattgagtcag
tctcttggtttggtctctaaaagtaaaggaaagggagcaaatagatacctaactgtgaag
aagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgactcataacaca
aaacatgctgttaggagccttattcagagatttcctgtcaccaataaagagcgtactgaa
cttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaaccgagaaatg
agcaagacaagtgggcgactcaacaatggcatccctcaagtcccagtgaaaagaggagag
tctgaatttgactccttcaggcagtccttgccagtgtttgagaaacaagaagaaattgtt
aaaataattaaggaaaataaagtagttttgattgtaggagaaactgggtctggaaagacc
acacagattcctcagttccttttagatgattgctttaaaaatggtatcccctgtcgtata
ttttgtactcaaccaagacgactagcagctattgctgtggctgaacgagttgctgcagag
agaagggaaaggattggtcaaacaattggttatcagatccgattggaaagcagggtttct
ccaaagacacttctgacattttgcactaatggggtgctacttcgaacgttgatggcaggt
gatagtacattgtcaacagtgacacatgttattgtggatgaagtgcatgaaagggatcga
tttagtgattttttacttacaaagttaagagatttgttgcaaaagcacccgactttgaaa
cttattctttctagtgctgccttggatgtaaatctcttcataagatactttggaagctgt
ccagtgatacatatacagggaagaccatttgaagtaaaagaaatgtttctggaagatatt
ttaagaactactggatatacaaacaaagaaatgttaaagtacaaaaaagaaaaacaacga
gaagagaaacaacaaaccacacttacagagtggtactcagctcaggagaatactttcaag
cctgaatctcagaggcagagaactgttccaaatgtgactgaagagtatgatgttttggat
gatggtggtgatgctgtcttcagtcagttgacagaaaaagatgtgaattgtcttgaacca
tggttaataaaggaaatggatgcttgtctttccgacatatggctacacaaagatgtggat
gcttttgctcaagtcttccaccttattttaactgagaatgttagtgttgattacagacat
agtgaaaccagtgcaacagctctgatggttgctgcaggacgaggctttgcaagtcaagta
gagcagttaattagtatgggagccaatgtccacagtaaagcatccaatggctggatggct
ttagattgggctaaacactttggacagactgaaattgtggatcttctagaatcttacagt
gcttcgctggaatttggaaatttggatgaaagttctctggttcaaacaaatggaaatgac
ctcagtgcagaagacagagagctcctgaaagcttatcatcatagttttgatgatgagaaa
gttgacttggatttgatcatgcatcttctgtacaatatctgccatagctgtgatgctggt
gcagtgttgatcttcctccctggatacgatgaaattgttgggctgagggatcgcatcctg
tttgatgacaagcgctttgctgaccatacacatagataccaagtctttatgcttcattca
aatatgcaaacatctgatcaaaagaaggtattaaaaaacccacctgcaggtgttcgaaaa
ataatcctttccactaatattgctgaaaccagcatcacagtcaatgatgttgtctttgtt
attgattctggcaaagtgaaagagaaatcctttgatgcactgaattttgttacaatgtta
aaaatggtatggatttccaaagctagtgccatacagcggaaaggaagagcggggcgatgt
agacctggaatttgtttccgtctgtttagtagactccgatttcagaatatgttggaattt
cagactccagaacttttgaggatgccgttacaggagctttgtttacataccaagctgtta
gccccagttaattgtaccattgctgatttccttatgaaagctcctgaacctccaccagct
ttaattgtaagaaatgctgtacaaatgcttaagacaatagatgcaatggatgcgtgggaa
gatctcactgaacttggatatcacttggctgacttgccagtagagccacatcttggtaaa
atggtcctgtgtgctgttgttttaaagtgtctggaccccatccttacaattgcctgcaca
ctggcatatcgagatccttttgtactgcctacccaggcctctcaaaaacgtgcagctatg
ctttgcaggaaacgtttcactgcaggaactttcagtgaccatatggcacttctcagagcc
ttccaggcatggcagaaagcacgaagtgatgggtgggagcgagccttttgtgaaaagaat
tttctctcacaagctaccatggaaataattattggcatgagaactcagttgcttggtcaa
cttagagcgtcaggttttgttagagcacgaggtggtggtgacattcgagatgttaacaca
aactccgagaactgggctgtcgttaaagctgcgttggtggcaggcatgtatcctaattta
gtccatgtggacagagagaatgtagtattgacagggccaaaggagaaaaaagtacgattt
catcccacttcagttctcagtcagcctcaatataaaaagattcctccagccaatggtcaa
gctgcagcaatccaggccctgcctacagattggcttatttatgatgaaatgaccagagcc
cacagaatagctaatattagatgctgctcagcagtgacccctgtcactgtgttggtattc
tgtggaccagctaggttggcaagtaatgctcttcaggagccttcatcctttagagcagat
ggcattcccaatgacagtagtgacagtgaaatggaggacagaactactgctaacttggct
gccttgaaacttgatgaatggcttaatttcaaactagagccagaggccgccagtttattg
ctgcagctcagacagaagtggcatagcttatttttacgtcgaatgagagctccatctaaa
ccttggtctcaagttgatgaagctagcatacgagcaattatagctgttttaagcactgaa
gaacaatgtgcaggtttacaacaaccgtctgggattggccagaggcccaggcccatgtct
tcagaagagcttcctttggcatcatcatggaggtcaaataatagcaggaaaagtgcagct
gacactgagttttctgaggagtctgctactgtagaaagagtactgatgaaatctccatct
ccagctttacacccgcctcagaagtacaaggatagaggcattttacaccctaaacggagc
actgatgaccggtcagaccaatcctctgtgaagtctacagatagcagtagctatccgagt
ccttgtgctagcccttctcctccatcctcaggaaagggctcaaaatctccttccccaaga
ccaaacatgcctgttcgatatttcataatgaagagtagcaatctgagaaaccttgaaatc
tctcagcagaagggcatctggtctacaacccccagtaatgagcggaagctgaatcgagcc
ttttgggaaagcagcatggtttacttggtattttctgttcaaggatctggtcatttccag
ggattttctaggatgtgttctgaaataggaagggagaagagccaggactggggctcagct
ggactcggaggagtatttaaggtggagtggataagaaaagaaagccttccctttcagttt
gcacaccatttactcaatccttggaatgacaacaagaaagtacagataagcagagatggg
caggaattggaacctcaggttggtgaacagttgctccagttatgggaacgccttccattg
ggagaaaagtccacagctgattga
DBGET
integrated database retrieval system
