Castor canadensis (American beaver): 109687721
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Entry
109687721 CDS
T04791
Symbol
Topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109687721 (Topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccan03032
]
109687721 (Topbp1)
03400 DNA repair and recombination proteins [BR:
ccan03400
]
109687721 (Topbp1)
DNA replication proteins [BR:
ccan03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
109687721 (Topbp1)
DNA repair and recombination proteins [BR:
ccan03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
109687721 (Topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
109687721
NCBI-ProteinID:
XP_020021309
UniProt:
A0A250Y7Q5
LinkDB
All DBs
Position
Unknown
AA seq
1521 aa
AA seq
DB search
MSRNDQDPFFVKFLKSSGNSECFLKALESIKEFQSEEYLQIITEEEALKIKENDRSLYIC
DPFSGTVFHHLKKLGCRIVGPQVVIFCMHHQRCVPRAEHPVYNMVMSDVTVSCTSLDKEK
REEVHKYVQMMGGRVYRDLNISVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQ
EKKIARYTDVNMEDFKCPIFLGCIICVTGLCGIDRKTVQQLTVKHGGQYMGQLKMNECTH
LIVQEPKGQKYECAKRWNVHCVTMQWFFDSIEKGFCQDESMYKTEPRLEAKTMPDTSTPT
GHVNTIDSQTLSNVSHISNVSGSCINESICSSVLNGRLESALENLESLDVSAFQAPEDLL
DGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNGDVTHVIVGDYDDELKHFWNKSAHRP
HVVGATWLLECFSKGYMLPEEPYIHANYQPVEIPVSDQPESKMVLSKKNGSFSKKHLDPN
EKREQADEDLLSQYVNNDSTVVEANKAEAEEAGGGPCNGSTGIEPINDSTHISLQENQSS
VSHCLPDDTTVTEEGLFSQKSFLVLGFNSENECSIANIIREHAGKIVLLQSRIVADYAVV
PLLGCEVEATVGEVVTNTWLVTCIDYQTLIDPKSNPLFTPVPVMPGTTPLEDCVISFSQC
VGAEKDSLIFLANHLGACVQEFFVRKSNVKKGMLASTHLILKEPVGSKYEASKKWNLPAV
TIAWLLETARIGKRADEKLFLIEGLPEEEQRLETKISEVDLNPGSPAHPGTYMETHRKTA
VSPLDMNRFQSKAFHAVISQHTAQASACPPVGHPLQKEPSLHLDTPSKFLSKDKLFKPSF
DVKEALAALETPRGASQQRRKLSTPLSEVIVRNLKLALANSSRNAVTLSASPQLKNALSE
KEEAPKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRWSFDETVTHFIYQGRPNDTNRE
YRSVKERGIHIVSEHWLLECAQEYKHLPESLYPHTYNPKMSLDISAVQDGHLCNSRVLSS
VSDKPDHLPVEENDIDNLATDNKELALSNGSGRSDTKGALTQTLEMRENFQKQLQEIMSA
TSIVKPQAQRPSLSRSGCNSASSTPDSTRSARSGRSRVLEALRQSRQIVPDVNTEPSQNE
QIIWDDPTAREERARLASNLQWPSCPTQYSELQVDIKTLVDSPFQKPVHDAEVAEQAVCD
PGSTCVTEAPKHLISEEVETPTKDGHLIPTPQAPSIAFPLANPPVAPQPREKIVTLEETH
EKFKKQYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPSCTHIVVGHPLRNEKYLAS
VAAGKWVLHRSYLEACRTAGHFMQEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKI
QQRQESGIVEGAFSGWKVILHVDQSREAGFKRLLQSGGAKVLPGHSVPFFKEATHLFSDL
NKLKPDDSGINIAEAVAQNVHCLRTEYIADFLMQESPPCVENYCLPEAVSFLQNNKELGP
VLSQKRKAPTEKNKIKRPRVH
NT seq
4566 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaatgaccaagatccgttttttgtgaagtttttaaagtcttcaggcaattcc
gaatgttttttgaaagctcttgagtcaataaaagaattccaatcagaagaatatcttcag
attattacagaagaagaggcattgaagataaaggagaatgacagatcactttatatctgt
gacccttttagtggcactgtcttccatcaccttaaaaagcttggctgcagaattgttggt
cctcaagtagtcatattttgtatgcaccaccagcgatgtgtcccaagagctgaacatcca
gtttataatatggttatgtctgatgtaactgtatcttgtacaagcctagataaagaaaag
agggaagaagtccataaatatgtgcaaatgatgggtggacgagtgtacagagaccttaat
atatcagtaactcacctcattgcaggagaagttggtagcaaaaaatatttagttgcagcc
aatctgaagaaacctattttgcttccttcttggattaaaacactttgggagaagtcacaa
gagaaaaaaatagctagatacactgatgtaaacatggaagatttcaagtgtcctattttt
cttggttgcataatctgtgtgactggcttgtgtggcatagacaggaagacagttcagcag
ctcacagttaagcatggaggtcaatacatgggacagctgaaaatgaatgaatgtacacac
ctcatagtgcaagaaccaaaaggacagaaatatgaatgtgccaaaagatggaatgtgcac
tgtgtgaccatgcaatggttttttgacagtattgagaaagggttttgtcaggatgaatct
atgtacaagacagaacctagactagaagcaaagaccatgcctgatacttcaactcctact
ggccatgtcaacacaattgatagtcaaactctttcaaatgtcagccatatttctaacgta
agtggaagttgcataaatgaatcaatatgcagttcagttcttaatggcagattggagtct
gcacttgaaaacctagagagtctggatgtcagtgcatttcaagcgcctgaagatttgcta
gatggttgtcggatatacctttgtggctttagtggcagaaagctagataaactgagaagg
cttatcaacagtggaggtggagttcgttttaatcaacttaatggagatgtaactcatgtg
attgtgggagattatgatgatgaattgaagcacttttggaataaatcagctcacaggcct
catgtagtgggagcgacatggttgctggagtgtttcagtaaaggttacatgcttcctgaa
gaaccctatatccatgctaactaccaaccagtagaaattccagtttcagatcaacctgaa
agtaaaatggtactttcaaaaaagaatggcagcttctctaagaagcacttggatcctaat
gagaagcgtgagcaagctgatgaagacctgctctctcagtatgtaaacaacgactccaca
gtggttgaagctaacaaggctgaagctgaagaggctggaggtgggccctgtaatggttct
acaggcatcgagcccatcaatgattctactcacatttctctgcaagaaaaccagtcttct
gtcagccattgccttcctgatgatactacagttactgaagaaggtttatttagccaaaag
agtttccttgttttgggttttaatagtgaaaatgaatgcagtattgcaaatatcataaga
gaacatgctggaaagattgttcttcttcagagcagaattgttgctgattatgctgtggtt
ccccttctggggtgtgaagtggaagcaaccgtgggggaagtggttacaaatacttggctg
gttacttgtatagactatcagactttaattgatccaaagtcaaatcctctctttacacca
gtcccagtaatgccaggaacgactcctttagaggattgtgttatttcattcagccagtgt
gttggagcagaaaaagattctttgatattcttagcaaatcatcttggagcctgtgttcaa
gaattctttgttcgtaaatccaatgtgaagaaaggcatgcttgccagtacacatctcata
ttgaaagaaccagttggttctaaatatgaagcttcaaagaagtggaatttgcccgcggtc
actatagcctggctgttggaaactgctagaattggaaagagagcagatgaaaagcttttt
ctgattgaagggttacctgaagaagaacaaagattggaaactaaaataagtgaagtagat
ctaaatccaggttctccagcacaccctgggacgtacatggaaactcacaggaaaacagct
gtttcgcctttggacatgaaccgttttcagagcaaagcttttcatgctgtgatctcacag
cacactgcacaggcttcagcctgtcctcccgtgggacatccacttcagaaggagccctca
ctacacctggacacaccatcaaaatttctgtccaaagacaaactcttcaagccttccttt
gatgtgaaggaggcactcgcagccttggaaaccccaagaggtgccagccaacagagaagg
aaacttagtacaccactctcagaagtcattgtcagaaacttgaaacttgctttggcaaac
agctctcggaatgctgtcactctttctgccagccctcaactgaagaatgccctgtcagag
aaggaagaggctccaaagccacttcacaaagtcgtggtatgtgtcagtaaaaagctcagt
aagaagcagagtgaactgaatgggattgcagcctctcttggagcagattacaggtggagt
tttgatgagacagtgactcatttcatctatcaagggcggccaaatgacactaatcgagag
tatagatctgtaaaagaaagaggcatacacattgtttcagagcactggcttttagaatgt
gcccaagagtataagcatcttcctgaatctctttatccacacacttacaatcccaaaatg
agcctggacatcagtgcggtgcaagatgggcacctctgtaacagtcgggttctctcctct
gtttctgataagccagatcatttgcctgtagaagagaatgatatagacaatttggccacc
gataataaagagttggcactgtccaatggaagcggaaggagtgacactaaaggagctctg
acgcagaccttagagatgagagagaacttccaaaagcagctgcaggagatcatgtctgca
acctccatagtgaaaccccaagcacagaggccttccctctcaagaagtggctgtaacagt
gcatcttcaacccctgacagcactcgctctgctcgaagtggacgaagcagagtcctggag
gcgctgaggcagtctcgacaaatagtacctgatgtcaacacagagccctcccaaaacgaa
cagatcatttgggatgatccaacagcgagggaggagagagcaaggcttgccagcaatctg
cagtggcccagctgtcccacgcagtactctgaactgcaggtggacattaaaacattggta
gattctccatttcaaaagcctgtgcatgatgcagaagttgctgaacaggctgtctgtgat
cctggaagtacatgtgtgactgaagccccaaaacacctgatctctgaagaagtggaaact
ccaacaaaagacggtcacctgatcccgactcctcaggcccccagcattgccttccccctg
gccaacccacctgtggctccacagcctagagaaaagattgtaacactggaggagactcat
gaaaaatttaaaaagcagtacatattccagttgtcatctctgaatcctcaagaacgtatt
gactattgtcatctgattgaaaaactaggtgggttggtgatagagaagcagtgctttgac
cccagctgcacacacattgttgtagggcacccacttcgaaatgagaagtatttagcctca
gtggcagctgggaagtgggtgcttcaccgctcctaccttgaagcctgcaggactgctgga
cacttcatgcaggaagaagactatgagtggggtagtagttccatacttgacgttttgact
ggcatcaatgtacagcaacgaagactagcacttgcagcaatgcggtggaggaaaaaaatc
cagcaaagacaagaatcaggcattgttgagggggcatttagtggatggaaggtcatttta
catgttgaccagtcccgagaagcagggttcaaacgccttcttcagtcaggaggagcaaag
gtgctacctggtcactctgtacctttttttaaagaggccacacatctcttttctgacttg
aataaactgaaaccagatgactcaggaattaatatagcagaggctgtagcccagaacgtg
cactgcttgagaacagaatacattgccgattttcttatgcaggaatcccctccttgtgta
gaaaattactgtctaccagaagctgtttcatttcttcagaataataaggaacttgggcct
gtattatcacaaaagaggaaagctcctacagagaaaaacaaaataaaacgacctagagta
cactaa
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integrated database retrieval system
