KEGG   Castor canadensis (American beaver): 109689811
Entry
109689811         CDS       T04791                                 
Symbol
Taf5l
Name
(RefSeq) LOW QUALITY PROTEIN: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ccan  Castor canadensis (American beaver)
Pathway
ccan03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ccan00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    109689811 (Taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccan03021]
    109689811 (Taf5l)
   03036 Chromosome and associated proteins [BR:ccan03036]
    109689811 (Taf5l)
Transcription machinery [BR:ccan03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     109689811 (Taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     109689811 (Taf5l)
Chromosome and associated proteins [BR:ccan03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     109689811 (Taf5l)
    STAGA complex
     109689811 (Taf5l)
    TFTC complex
     109689811 (Taf5l)
    SAGA complex
     109689811 (Taf5l)
    SLIK complex
     109689811 (Taf5l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd TFIID_NTD2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_EML Beta-prop_SCAP Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_IFT122_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_EIPR1 Beta-prop_Vps41 WD40_RFWD3 Beta-prop_WDR19_1st PROPPIN PEP5_VPS11_N Beta-prop_IP5PC_F WD_LRWD1 Ge1_WD40 Nbas_N vATP-synt_AC39 Beta-prop_DCAF12 Mala_s_1-like
Other DBs
NCBI-GeneID: 109689811
NCBI-ProteinID: XP_020024425
UniProt: A0A8B7V153
LinkDB
Position
Unknown
AA seq 615 aa
MIWGVERWSSECLLQNTLEEKEYLQVMKRVRTEQVQVAVSCYLKRRQYVDSDGPLKQGLR
LSQTPEEMATNLTVQSESGCANMVSAAPCQAEPQQYEVQFGRLRSFLTDSDSQHSHEVMP
LLYPLFVYLHLHLVQNSPKSTVESFYSRFHGMFLQNAAQKDVIEQLQTTQTVQDILSNFK
LRAFLDNKYVVRLQEDSYNYLIRYLQSDNNTALCKVLAVHIHLDVQPAKRTDYQLYASGG
SSRSESGGLEPPEVPNPILPNEAALEVLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTA
EISPDSKLLAAGFDSSCIKLWSLRSKKLKSEPHHADASRIHLACDTLEEEEDEEDSVGTE
MKVLRGHSGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYRGHAYPVWDLDISP
YSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWS
AQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSIT
SLAFSPDSGLVASASMDNSVRVWDIRNTCCSAPADGSSGELVGVYTGQMSNVLSVQFMAC
NLLLVTGITQENQEH
NT seq 1848 nt   +upstreamnt  +downstreamnt
atgatttggggagttgaaagatggtcctcagagtgtctgctgcaaaacactttggaagaa
aaggaatatttacaggtcatgaaacgcgtgcgtacggagcaggtccaggtggcggtgtcc
tgctacctcaaacgccggcagtacgtggactcagacggtcccctgaagcaaggcctgagg
ctgtcacagacccctgaggagatggcaaccaacctcacagtccagtcagaatctggttgt
gccaacatggtgtctgcagccccctgccaggcagagccccagcaatatgaagtacagttt
ggacggctgcgaagttttctcactgattctgattcccagcacagccatgaagtgatgcct
ctcctgtaccccctctttgtctacctccatctccacctggtccagaacagccccaagagc
accgtggagagcttctacagccgcttccatgggatgttcctgcagaatgcagctcagaag
gacgtcatcgagcagctgcagaccacgcagactgtccaggacatcctgtcaaacttcaag
cttcgcgcattcctagacaacaagtatgtggtccgtctccaagaagacagctacaactac
ctgatccgctacctccaaagcgacaacaacactgccctgtgcaaggtcctcgctgtgcac
attcacctggatgtgcagcctgccaagaggacagactaccagctgtacgccagcggaggc
tcctcgcgcagtgagagtggtggcctggagcccccggaggtgcccaaccctatcctgccc
aacgaggcagccctggaggtcctgcaggagagcatcaagcgtgtcaaggacgggcccccc
tccctcacgaccatctgcttctacgccttctacaacacagagcagctgctgaacaccgcg
gagatctcccccgacagcaagctgctcgctgcagggtttgacagctcctgcatcaagctc
tggagcttgcggtccaagaagttgaagtcagagccccaccatgcggatgcatcccgcatc
cacctggcttgtgacactctggaggaggaggaggatgaggaggacagcgtgggcacggag
atgaaggtgctgcggggccactctggaccagtgtacagcacgcgcttcctcgcagacagc
tcagggttgctctcttgttctgaagatatgtccatcaggtactgggacctgggcagtttc
accaacactgtgctgtaccgagggcacgcctaccctgtgtgggacctggacatcagcccc
tacagtctgtactttgccagcggctcccatgaccgcactgccaggctgtggtccttcgat
cggacgtacccactgcggatctatgcagggcacttggcggatgtggactgtgtcaaattc
caccccaactcaaactacttagccacaggctcaaccgacaagaccgtgaggctgtggagc
gcccagcaggggaactcagtgaggctcttcactggccaccggggccctgtgctctccctt
gccttctctcccaatggtaagtacttggcgtccgcaggcgaggaccagcggttgaagctg
tgggacttggcctccgggaccctttttaaagaactgagaggccacacggacagcatcacc
agcctggccttcagccctgacagcggcctggtggcttctgcctccatggacaactctgtg
cgtgtctgggacatcaggaatacctgctgcagcgcgcctgctgacggctcctcgggtgag
ctcgtgggtgtgtacaccgggcagatgagcaatgttctgagtgtgcagttcatggcctgc
aacctccttctggtgacgggaatcacacaagagaatcaggagcattga

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