Castor canadensis (American beaver): 109690024
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Entry
109690024 CDS
T04791
Symbol
Prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109690024 (Prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccan03041
]
109690024 (Prpf8)
Spliceosome [BR:
ccan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109690024 (Prpf8)
Complex C
U5 SnRNP specific factors
109690024 (Prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
109690024
NCBI-ProteinID:
XP_020024719
UniProt:
A0A250YMA3
LinkDB
All DBs
Position
Unknown
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
SQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtgtttccttaccgagggccgggaaacccggtgcccggccctctagccccg
ctgccggactacatgtcggaggagaaactgcaggagaaagcccgaaaatggcagcagttg
caggccaagcgctatgcagaaaagcggaagtttggatttgtggatgctcagaaggaagac
atgcccccagaacatgtcaggaagatcattcgagaccatggagacatgaccaataggaag
tttcgtcatgacaaaagggtctatttgggtgccctaaagtacatgccacatgctgtcctt
aagctcctggagaatatgcctatgccttgggagcagattcgggatgtgcctgtgctgtac
cacatcactggagccatttccttcgtcaatgagattccctgggtcattgaaccagtctac
atctcccagtgggggtcaatgtggattatgatgcgtcgagagaaaagagacaggaggcat
ttcaagaggatgcgcttcccgcctttcgatgatgaggaaccgcccctggattatgctgat
aacatcctagatgttgagccactggaagccattcagctagagctggaccctgaggaagat
gctcctgtattggactggttctatgaccaccagccattgagagacagcaggaagtatgtt
aatggctccacttaccagcgctggcagttcacactgcctatgatgtccactctctaccgc
ctggccaatcagcttctgacagacttggtggatgacaactacttctatctgtttgatctg
aaggccttctttacctctaaggcgctcaatatggccattcctggaggacccaaatttgaa
cctctggttcgagatatcaacctacaagatgaagactggaatgaattcaatgatattaat
aagatcatcattcgacagcctattcgcactgaatacaagattgcttttccttacctgtac
aacaaccttccacaccacgtccacctcacctggtaccacactcctaatgttgtgttcatc
aaaactgaggatcctgatttgccagctttctactttgatcctttgatcaatccaatctcc
cataggcactctgtcaagagccaggaaccattgccagatgatgatgaggaatttgagctc
ccagagttcgtggagcccttcttgaaggacacacccctctacacagacaatacagccaat
ggtattgccctactttgggccccacggcccttcaacctacgctctggtcgtacccgccgg
gccctggacataccccttgttaagaactggtatcgggagcattgtcctgctgggcagcct
gtgaaagtgcgagtctcctaccagaagttgctcaagtactatgtgttgaatgccctgaaa
catcggcctcctaaagcccaaaagaagaggtatctgttccgctccttcaaagctaccaaa
ttctttcagtctacaaagctggactgggtggaggtggggctgcaggtttgccgccagggc
tacaacatgctcaaccttctcattcaccgtaaaaacctcaactacctacacctggactat
aacttcaacctcaagcctgtcaagacacttaccaccaaggaaagaaagaaatctcgtttt
gggaatgctttccatctgtgtcgggaagtactgcgtttaactaagttggttgtggacagt
catgtgcaataccgcttgggcaacgtggatgccttccagctggcagatggattgcagtat
atatttgcccatgtgggccagctgacaggcatgtatcggtacaaatacaagctgatgcgg
cagatccgtatgtgcaaggacctgaagcatctcatctactaccgcttcaatacgggccct
gtagggaagggacctggctgtggcttctgggctgctggctggcgggtctggctgtttttt
atgcgtggcattactcctttgctggagcgatggctgggcaacctcctggcccggcagttt
gaaggccgacactcaaagggggtggcaaagacagtaacaaagcaacgagtggagtcccat
tttgaccttgaacttcgggcagctgtgatgcatgatattctggacatgatgcctgagggc
atcaaacagaataaggcccggacaattctacagcacctcagtgaagcctggcgctgctgg
aaggccaacattccctggaaggtcccaggacttccaacacccatagagaacatgatactt
aggtatgtgaaggccaaagctgattggtggactaacactgcccactacaaccgagaacgg
atccgccgtggagctactgtagacaagactgtttgcaaaaagaacctgggccgcctcact
cggctctacctgaaggcagaacaggagcgacagcacaattacctgaaggatggtccttac
atcacagcagaggaggcagtggcagtatataccaccactgtgcactggttggaaagccgt
aggttctctcctatcccattccccccactttcctacaagcatgacaccaagttgctcatc
ttggccttggagcgactcaaggaagcttatagtgtgaagtctcggttaaaccagtctcag
agggaggagctaggtttgatcgagcaagcctatgacaacccccatgaggcattgtctcgc
atcaagcgtcatctcctcacacagagagcctttaaggaagtgggcattgaatttatggac
ctctacagccaccttgtaccagtctatgatgtggaaccattggagaagataactgatgcc
tatctggaccagtacctgtggtatgaagctgacaagcgtcgccttttcccgccctggatc
aagcctgctgacacagaaccgcctccactacttgtttacaagtggtgccaaggcatcaat
aacctgcaggatgtgtgggagaccagtgagggcgagtgcaatgtcatgctggaatcacgc
tttgagaagatgtatgaaaagattgacttgaccctgttaaatagactgctgcgactcatc
gtggatcacaacatagctgactatatgacagctaagaacaatgttgtcatcaactataag
gacatgaaccatacaaattcatatggaatcatcagaggcctgcagtttgcctcgtttatt
gtgcagtactatggcctggtgatggatttgcttgtgttaggattgcaccgggccagtgag
atggctggtccccctcagatgccaaatgacttcctcagtttccaggacatagccactgag
gctgcccaccctatccgacttttctgtagatacattgatcgcatccatatttttttcagg
ttcacagcagatgaggctcgggacctcatccagcgttacttgacagagcaccctgacccc
aataatgaaaacatagttggatataataacaagaaatgctggccccgtgatgcccgcatg
cgcctcatgaagcacgatgtcaacttgggtcgagcagtgttctgggacatcaagaaccgt
ttgccccgatcagtgactacagttcagtgggagaatagctttgtgtcagtgtatagtaaa
gataaccccaacctgctgttcaacatgtgtggctttgagtgccgcatcctgcctaaatgc
cgtaccagctatgaggagttcactcacaaggatggggtctggaacctacagaatgaggta
actaaggagcggacggctcagtgtttcctgcgtgtggatgatgagtcaatgcagcgtttc
cacaatcgtgtgcgtcagattctgatggcttctggctccactaccttcaccaagattgtg
aataagtggaatacagctctcattggccttatgacatacttccgtgaagctgtggtgaac
acccaggaactcctagacttactggtaaagtgtgagaataagatccagacacgtatcaag
attggactcaactccaagatgccaagtcgcttccctcctgttgtattctacacccctaag
gagttgggtggacttggcatgttgtcaatgggccatgtgctcatcccccagtctgatctc
aggtggtccaagcagacagatgtaggtatcacacactttcgttcaggaatgagccatgaa
gaagaccagttgattcctaatttataccgctacatacagccatgggagagtgagttcatt
gattctcagcgtgtctgggctgagtatgcactcaagagacaagaggccattgctcagaac
agacggctgactttagaagatctagaagactcatgggatcgtggcattcctcgaatcaat
acccttttccagaaggatcggcatactttggcttatgataagggctggcgtgttcggaca
gattttaagcagtaccaggttttgaagcagaaccctttctggtggacacaccagcggcat
gatgggaagctgtggaacctaaacaactaccgtacagacatgatccaggccctgggtggt
gtagaaggcattctggaacatacacttttcaagggcacttactttcctacctgggaaggt
cttttctgggagaaggccagtggctttgaggaatctatgaagtggaagaaattaactaat
gctcagcgatcaggattaaaccagattcccaatcgtagattcaccctttggtggtcccca
accatcaatcgagccaatgtgtatgtaggctttcaggtgcagctggacctgacaggtatc
ttcatgcatggcaagatccccacgctgaagatctctctcatccagatattccgagctcac
ttgtggcagaagatccatgagagcatcgttatggatttgtgtcaggtatttgatcaggaa
ctggatgcactggaaattgagacagtacaaaaggaaacaattcatccccgaaagtcctat
aagatgaactcttcctgtgcagatatactactttttgcctcctataagtggaatgtctcc
aggccttcattgttggcagattccaaggatgtgatggacagcaccaccactcagaaatat
tggattgacatccagttacgctggggagactatgattcccatgatattgagcgctatgcc
cgggctaagttcctggactacaccacggacaacatgagtatctacccttcacccacaggt
gtgctcattgccattgacctggcatataacctgcacagtgcctatggaaactggttccca
ggcagtaagcctctcatacagcaggccatggccaagatcatgaaggcaaatcctgcctta
tatgtgttacgtgaacggatccgcaaggggctgcagctctattcttctgagcccactgag
ccttatctgtcctctcagaactatggtgaacttttctccaaccagattatctggtttgtg
gatgacactaacgtctacagagtgactatccacaaaacttttgaggggaatttgacaacc
aagcccatcaatggggccatcttcatcttcaacccacgcacaggacaactattcctcaaa
ataatccacacatcagtgtgggctggacagaagcgtttgggtcagttggccaagtggaag
acagctgaggaagtggctgccttgatccgatctttgcctgtggaggagcagcccaagcag
atcattgtcaccaggaagggcatgctggatccattggaggtacacttactagacttcccc
aacattgtgatcaaaggatcggagctccagctccctttccaagcttgtctcaaggtggaa
aagtttggggatctcatccttaaagccactgagccccagatggttctcttcaacctctat
gatgactggctgaagactatctcatcttacacggctttctcccgtctcatcctgattctg
cgggctctgcatgtgaacaatgaccgggcaaaggtgatcctgaagccagataaaactact
attacagaaccccaccacatctggcccaccctgactgatgaggagtggatcaaagtggaa
gtgcaactcaaggatcttatcttggctgactacgggaagaaaaacaatgtgaatgtggca
tcgctgacacagtcagaaattagagacattatcctgggtatggagatctcagcaccatca
cagcagcggcagcagatagccgagattgagaagcagaccaaggaacagtcacaactgact
gcaacacagactcgcactgtcaacaagcatggtgatgagatcatcacttccaccaccagc
aactatgaaacccagactttctcatctaagactgaatggagggtcagggccatctctgct
gccaacctgcatttacggaccaatcacatttatgtttcatctgatgacatcaaagagact
ggttatacctatatccttccaaagaatgtgcttaagaagttcatctgtatatctgacctt
cgtgcccaaattgcaggatacctgtatggcgtgagcccgccagataacccccaggtgaag
gagatccgctgtatcgtgatggtgccacagtgggggactcaccagactgtgcacctgcct
agccagctgccacagcatgagtacctcaaggaaatggaacccttaggttggatccacact
cagcccaatgaatctccccagctatcaccccaggatgtcaccacccatgccaagattatg
gctgataatccatcttgggatggtgagaagaccattatcatcacctgcagctttacacca
ggctcctgcacactgacagcctacaagttgacccctagtggctatgaatggggccgccag
aacacagacaaaggcaacaaccccaaaggttacctaccctcacactatgagagggtccag
atgctgctatctgaccgcttccttggcttctttatggtccctgcccagtcctcgtggaac
tacaactttatgggtgtccggcatgatcccaacatgaagtatgagctgcagctggcaaac
cccaaagagttctaccatgaggtgcacagaccttcccacttcctcaattttgcactcctg
caggagggtgaggtctactctgcagatcgggaggacctctatgcttag
DBGET
integrated database retrieval system
