Castor canadensis (American beaver): 109690257
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Entry
109690257 CDS
T04791
Symbol
Sympk
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin
KO
K06100
symplekin
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03015
mRNA surveillance pathway
ccan04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109690257 (Sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
109690257 (Sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccan03021
]
109690257 (Sympk)
03019 Messenger RNA biogenesis [BR:
ccan03019
]
109690257 (Sympk)
Transcription machinery [BR:
ccan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109690257 (Sympk)
Messenger RNA biogenesis [BR:
ccan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109690257 (Sympk)
U7-dependent histone pre-mRNA processing factors
109690257 (Sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
109690257
NCBI-ProteinID:
XP_020025093
UniProt:
A0A8B7V039
LinkDB
All DBs
Position
Unknown
AA seq
1272 aa
AA seq
DB search
MAAMASSSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQ
VQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNML
LRDENVNVVKKAILTMTQLYKVALQWMVKSRVINDLQEACWDMVSAMAGDIILLLDSDND
GIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALE
QLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSV
RKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSGKDARKRPRDDSDSTL
KKMKLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLI
SMVYLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPK
EEKVVKPESVLIKRRLSAQGQAISVVGSLSSMSPLEEEVPQAKRRPEPIIPVTQPRLAGA
GGRKKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFD
SGLKAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGAAGTLDKYEACLIRLLSGLQERP
DQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVL
LDLSSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTE
VAAPWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMN
SPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNG
LEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKC
DMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVM
NILARLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLA
HVRSFTPHQQAHIPNSIMTILEASGKQEPEAKEAPAGPLEEDDLEPLALAPAPAPRPPQD
LMGMRLAQEKALKXQLEEEQKLKPAGVGAAAASSCPARPGPPPAEEAMDFREEGPECETP
AIFISMDDDSGLTEAALLDSSLEGPLPKEAAVGAPAAKEERSPQTLGPAGDDAKTPSPAA
EEAGEPEARGNS
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggcagccatggcaagcagcagtggggacagtgtcacccgccggagcgtggcatcacag
tttttcacacaagaggaagggccaggcatcgatggcatgaccacctcagagagggtggtg
gatctcctgaaccaggcagcactgatcaccaatgactcaaagatcacagtgctcaaacag
gtccaggagctgatcatcaacaaagaccccacactcctggacaatttcctagatgagatc
atcgctttccaagcagacaagtccatcgaagtgcgaaagtttgtcatcggcttcatcgag
gaggcatgcaagcgagacattgagttgctgctgaaactgattgccaacctcaacatgctc
ctgagggatgagaatgtgaacgtggtgaagaaggccatcctcaccatgacccagctctac
aaggtggccctgcagtggatggtgaagtcacgggtcatcaatgatctccaggaggcctgc
tgggacatggtatcagccatggctggggacatcatcctgctgttggactctgacaatgat
gggatccgcacacatgccatcaagtttgtagagggtctcattgtcaccctgtcaccccgc
atggctgactcagagataccccggcggcaggagcacgacatcagcctggaccgcatccct
cgtgaccacccctatatccagtataatgtgctgtgggaagaaggcaaggcggccttggag
cagctgctcaagttcatggtgcaccctgccatctcctccatcaacctgaccacggcgctg
ggctcccttgccaatattgcccgccagagacctatgttcatgtctgaggtgatccaggcc
tacgaaacactgcacgccaacctacccccaacactggccaaatctcaggtgagcagcgtg
cgcaagaacctcaagctgcacctgttgagtgtactcaagcaccccgcctccttggagttc
caggctcagatcaccaccctgctggtggacctgggcacgcctcaagctgaaattgcccgc
aacatgcccagtggcaaggatgcccgcaagcggccccgagatgactcggattccacactt
aagaagatgaagctagagcccaacctgggggaagatgatgaagacaaggacttggagcct
ggtccatccgggacctcaaaggcttcagcccagatctcaggccagtcggacacagacatc
acagctgagttcctgcagcctctgctgacgcccgacaatgtggccaatctggtcctcatc
agcatggtgtacctacctgaggccatgcctgcctcctttcaagccatctacaccccagtg
gagtcagcaggtactgaagcccagattaagcacctggctcggctcatggccacacagatg
acagctgcaggacttggcccaggtgtggagcagaccaagcaatgcaaggaggagcccaag
gaggagaaggtggtgaagccagagagtgtcctgatcaagcggcgcctgtcagcccagggc
caggccatctctgtggtaggctctctgagctccatgtccccgctggaggaggaggtaccc
caggcgaagaggagaccagagcccatcatccctgtcacgcagccccggctggcaggtgct
ggtgggcgcaagaagatcttccgtctgagtgacgtgctgaagcccctgacagatgcccag
gtggaagctatgaagctgggcgctgtgaagcggatcctgcgggctgagaaggctgtggcc
tgcagcggggcggcccaggtgcgtatcaagatcctggccagcctggtgacacagtttgac
tcaggcctcaaggctgaagtcttgtcctttatcctggaggatgtgcgggcccgcctggac
ctggccttcgcctggctctaccaggagtacaacgcctatctggcagctggtgctgcgggc
accctggacaaatatgaagcctgcctcatccgcctgctctctggccttcaggagagacca
gaccagaaggatgggatcttcaccaaggtggtgctggaagccccactcatcactgagagt
gccctggaggtgattcgcaagtactgcgaggatgagagccgcacctacctgggcatgtcc
actcttagagacttgatcttcaagcgcccgtcccgccagttccagtacctgcacgtcctc
ctagacctcagctcccatgagaaggacaaggtgcgctcccaggccctactgttcattaag
cgtatgtacgagaaggagcagctgcgagaatatgtggagaaatttgccctcaactacctg
cagctcttggtccatcccaacccaccatccgtgctgtttggagccgacaaggacacagag
gtggcggccccctggaccgaggagacggtgaaacagtgtctgtacctctacctggcactc
ctgcctcagaaccacaagttaatccacgagctggcggccgtgtacaccgaggctatcgct
gacatcaagcggacggttttgagggtcattgaacagccgatccgaggtatgggcatgaat
tcgcctgagctgctcctgctggtggaaaactgccccaagggggcagagaccctggtcacc
cgctgtctgcacagcctcacagataaagtgccaccctccccagagttggtgaagcgggtc
cgtgacctgtaccacaagcgtctgcctgatgtccgcttcctcatccccgtgctcaatggg
ctggagaagaaagaggtgatccaggccctgcccaaactcatcaaactcaaccccatcgtg
gtgaaggaggtcttcaaccggctgctgggcacccagcatggtgaaggcaactcggccttg
tcccccctgaaccctggagagctcctgattgcgctacacaacattgactcagtgaagtgc
gacatgaaatccatcatcaaagccaccaacctgtgctttgcggagcggaacgtgtacacg
tcggaggtgctggccgtggtgatgcagcagctcatggagcagagccccctgcccatgctg
ctcatgaggaccgtcatccagtccctgaccatgtacccccgcctggggggcttcgtcatg
aacatcctggcccgcctcatcatgaagcaggtgtggaagtatcccaaggtgtgggagggc
ttcatcaagtgctgccagcgcaccaagccccagagcttccaggtcatcctgcagctgccg
ccccagcagctgggcgccgtctttgacaagtgcccggaactccgggagcccctgctggcc
cacgtgcgctccttcaccccccaccagcaagcacatatccccaactccatcatgaccatc
ttggaggccagcggcaagcaggagccagaggccaaggaggcgcctgcagggcccctggaa
gaggacgacctggagcccctggctctggcccctgctccggccccccggcccccgcaggac
ctcatgggcatgaggctggcccaggagaaggccttgaagncgcagctggaggaggagcag
aagctgaagccggcgggcgtgggtgcggccgccgcctcctcgtgccccgcgcggcccggg
cctcccccggccgaggaggccatggatttccgggaggaggggccggagtgcgagaccccg
gccatcttcatcagcatggacgacgactcggggctcaccgaggccgcgctcctggactct
agtcttgaggggcccctccctaaggaggcagcagtgggcgcgcccgccgcgaaggaggag
cggagcccgcagaccctcggccccgcgggggacgacgccaagacacccagccccgcggcc
gaggaggcgggggagcccgaggccaggggcaacagctga
DBGET
integrated database retrieval system
