Castor canadensis (American beaver): 109690574
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Entry
109690574 CDS
T04791
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03082
ATP-dependent chromatin remodeling
ccan04714
Thermogenesis
ccan05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109690574
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
109690574
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
109690574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccan03021
]
109690574
03036 Chromosome and associated proteins [BR:
ccan03036
]
109690574
Transcription machinery [BR:
ccan03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109690574
Chromosome and associated proteins [BR:
ccan03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
109690574
Chromatin remodeling factors
BAF complex
109690574
PBAF complex
109690574
GBAF(ncBAF) complex
109690574
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
109690574
NCBI-ProteinID:
XP_020025605
UniProt:
A0A250Y7T2
LinkDB
All DBs
Position
Unknown
AA seq
1597 aa
AA seq
DB search
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM
GSADFPQEGMHQLHKPIDGMHEKGLVEDIHCGSMKGTGVRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGPLVPGDLQAMNQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQQQQAPQPQPQQQQATLVSYNRPSGSGPDLLGGLSTPQKLPVPTPSGRPSPAPPA
TVQPPAASVPGPSVQQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQAR
IAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSK
AYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKI
QKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQT
DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDL
PVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEDSDSDYEEEDEEEESSR
QETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVE
RQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN
GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI
IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWA
LLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKE
VESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLR
KICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFC
QMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGL
NLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLN
VDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLF
MRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRD
VDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKEPAKEDVEKAKKRRGRPPA
EKLSPNPPKLTKQMNAIIDTVINYKDRCNVEKVPSNSQLEIEGNSSGRQLSEVFIQLPSR
KELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSI
VLQSVFKSARQKIAKEEESEDESNEEEEDEEEEESESEAKAVKVKIKLNKKDEKGRDKGK
GKKRPNRGKAKPVVSDFDSDEEQDENEQSEASGTDDE
NT seq
4794 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcccacagacccggctgcaatgccccatcccgggccctcaccagggcctgga
ccatcccctggaccaattctggggcctagtccaggaccaggaccatccccaggttctgtc
cacagcatgatggggccaagtcctggacctcccagtgtctcgcaccctatgccaacaatg
ggctctgctgacttcccacaggaaggcatgcatcagctgcataagcctattgatgggatg
catgagaagggacttgtagaagatattcattgtggatccatgaagggcacaggcgtgcga
cctcctcacccaggaatgggccctcctcagagtccgatggatcaacacagccaaggttac
atgtcaccacacccatctccattgggagccccagagcacgtctccagccctatatctgga
ggaggcccaaccccacctcagatgccacccagccagccaggacccctcgttcctggtgat
ctgcaggcgatgaaccagcccaacagaggtccctcacctttcagtcctgtccagctgcac
cagcttcgagctcagattttagcttacaaaatgttggcccggggccagccccttcccgaa
acattgcagcttgcagtccagggaaaaaggacgttgcctggcctgcagcagcagcagcag
caacagcagcagcagcagcagcagcaacagcagcagcagcagcagcagcaacagcagcag
cagcagcagcagcaacagcaacagcaggcaccacagccacaaccccagcagcagcaggca
actcttgttagctacaacagaccatctggctctgggcctgacctgctgggtggcctcagc
accccacagaagctgccagtgcctactcccagcggccgcccttcacctgcacccccagcc
accgtgcagccacctgcggcctcagtgcctgggccctcagtacagcagcctgcgcccggg
cagccctcacccgtcctgcagctgcaacagaagcagagtcgcatcagccccatccagaaa
ccacaaggcctggacccagtggagatcctgcaggagcgggagtacagacttcaggctcgc
atagctcacaggatacaagaactagaaaatctgcctggctctttgccaccagatttacga
accaaagcaaccgtggaactgaaagcacttcggttactcaatttccaacgtcagctgaga
caggaggtggtggcctgcatgcgtagggataccaccctggagacggctctgaactccaaa
gcttacaaacggagcaagcgccagactctgcgagaagcccgcatgacggagaagctggag
aagcagcaaaagattgaacaggaaaggaagcgccggcagaaacaccaggaatacctgaac
agcattttgcaacatgcaaaagatttcaaggaataccatcgctctgtggctggaaagata
cagaaactttccaaagcagtggcaacttggcatgccaacaccgaaagggagcaaaagaag
gagacagagcggattgaaaaggaaagaatgcggagattgatggctgaagatgaagagggc
tataggaaactgattgatcaaaagaaagataggcgtttagcttaccttttacagcagact
gatgagtatgtggccaatctgaccaacctggtttgggagcacaagcaggcccaagcagcc
aaagagaagaagaagaggaggagaaggaagaagaaggctgaagagaatgctgagggagga
gagtctgccctgggaccagatggagagccaatagatgagagcagtcagatgagcgacctg
cctgtcaaagtgactcacacagaaaccggcaaggtcctatttggaccagaagcacccaaa
gcaagtcagctggatgcctggttggaaatgaatcctggttatgaagttgctcctagatct
gatagtgaagatagtgactctgactacgaggaagaggatgaggaagaagagtccagtaga
caggaaaccgaagagaaaatacttctggatccaaacagtgaagaagtttctgagaaggat
gctaagcagatcattgaaacagcgaagcaagatgtggatgatgagtacagcatgcagtac
agtgccagagggtcccagtcctactacaccgtggctcatgccatctcagagagagtggag
aggcagtctgctctcctcattaatggaaccctgaagcattaccagctccagggcctggaa
tggatggtttccctgtataataacaatttgaacggaatcttagctgatgaaatggggcta
ggcaagaccatacagaccattgcactcatcacttacctgatggagcacaaaagactcaat
ggcccctatctcatcattgttcccctctcgactctatctaactggacatatgaatttgac
aagtgggctccgtctgtggtgaaaatttcttacaagggtacccctgccatgcggcgctcc
cttgtcccccagctacggagtggcaaattcaatgtccttttaactacttatgagtacatt
ataaaagacaagcacattcttgcaaagatacggtggaaatacatgatagtggatgaaggc
caccggatgaagaatcatcactgcaagctgactcaggtcttgaatactcactatgtggcc
cccagaagaatcctcctgactgggaccccactgcagaacaagctacctgaactctgggcc
ctcctcaacttcctcctccccacaatttttaagagctgcagtacattcgaacagtggttt
aatgctccatttgccatgactggcgaaagggtggacttaaatgaagaagaaactatattg
atcatccggcgtttgcataaggtgttgagaccatttttactgaggagactgaagaaagaa
gttgaatctcagcttccagaaaaagttgaatatgtgatcaagtgtgatatgtcagctctg
cagaagattttgtaccgccatatgcaagccaaggggatcctgctcacagatggttctgag
aaagataagaaggggaaaggaggtgcaaagactcttatgaacactatcatgcagttgagg
aaaatctgcaatcatccctatatgtttcagcacattgaggaatcctttgctgaacaccta
ggctattcaaatggagtcattaatggggctgagctgtatcgggcttcaggaaaatttgag
ctgcttgatcgtattctgcccaaattgagagcaactaaccaccgcgtgctgcttttctgc
cagatgacatctctcatgaccatcatggaggattactttgcttttcggaacttcctttac
ctgcgccttgatggcaccaccaagtctgaagatcgtgctgctttgctgaaaaaattcaat
gaacctgggtcccaatatttcattttcttgttgagcacgcgagctggaggcctgggctta
aatctgcaagcagctgacacggtggtcatctttgacagcgactggaatcctcaccaggat
ctgcaggcacaagaccgggctcaccgcatcggtcaacagaatgaggtccgggttctgaga
ctctgcaccgtgaacagtgtggaagaaaagattcttgcagcagcaaaatacaagctgaac
gtggatcagaaagttatccaggccggcatgtttgatcagaagtcttcaagccatgagcgg
agggcattcctgcaggccatattggagcatgaagaggaaaatgaggaagaagatgaagta
ccagacgatgagactctgaaccaaatgattgctcgacgagaagaagaatttgaccttttt
atgcgtatggacatggacaggcggagggaagatgcccgaaatccaaagcgtaaacctcgc
ttaatggaggaagatgagttgccctcctggattattaaggatgatgctgaagtggaaagg
ctcacatgtgaagaggaagaggagaaaatatttggtagggggtctcgccagcgccgtgat
gtggattatagcgatgccctgacagagaagcaatggctcagggccattgaagacggcaat
ttggaagaaatggaagaggaagtacggcttaagaaaagaaaaagacgaagaaatgtggac
aaagaacctgctaaagaagatgtggaaaaagccaagaagcgaagaggccgccctccagct
gagaaactctcaccaaatccccccaaactgacaaagcagatgaatgctatcattgatacc
gtgataaactacaaagataggtgtaacgtggagaaggtgcccagtaattctcagttggaa
atagaaggaaacagttcagggcgacagctcagtgaagtcttcattcagttaccttcccgg
aaagagttaccagaatactatgaattaattaggaagccagtggatttcaaaaaaataaag
gaaagaattcgtaatcacaagtaccggagccttggcgacctggagaaagatgtcatgctt
ctctgtcacaatgcacagacattcaacttggagggatcccagatctacgaagactccatt
gtcttacagtcagtgtttaaaagcgctcggcagaaaattgccaaagaggaagagagtgag
gacgaaagcaatgaagaggaggaagatgaagaagaagaggagtccgagtctgaggcaaaa
gctgttaaggtgaaaatcaagcttaataaaaaagatgagaaaggccgggacaaaggaaaa
ggcaagaaaaggccaaatcgaggaaaagccaaaccggttgtgagtgatttcgacagcgat
gaagaacaggatgaaaatgaacagtcagaagcaagtggaactgatgatgagtga
DBGET
integrated database retrieval system
