Castor canadensis (American beaver): 109690967
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Entry
109690967 CDS
T04791
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109690967 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccan03019
]
109690967 (Xab2)
03041 Spliceosome [BR:
ccan03041
]
109690967 (Xab2)
Messenger RNA biogenesis [BR:
ccan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109690967 (Xab2)
Spliceosome [BR:
ccan03041
]
Complex B
Other components
Prp19-related factors
109690967 (Xab2)
Complex C
109690967 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
TPR_MalT
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
109690967
NCBI-ProteinID:
XP_020026219
UniProt:
A0A250YLU2
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARVSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLINRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDSSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAELAQQANPEEIQLGEEEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgagtctcgcggcccgagcggccggaccttgtctttgaggaagag
gaccttccctatgaggaggaaatcatgcggaaccagttctctgtcaaatgctggctccgc
tacattgagttcaaacagggtgccccaaagccccgactcaatcagctgtatgagcgggca
ctcaagctgctgccctgcagctacaaactctggtaccgctacctgaaggcacgccgggca
caggtgaagcatcgctgtgtgaccgaccctgcctatgaagatgtcaacaactgccatgag
agggcgtttgtgttcatgcacaagatgccccgtctatggctagattattgccagttcctc
atggaccagggacgtgtcacacacacacgccgcacctttgaccgcgccctccgggcacta
cccatcacacagcactctcgtatttggcccctgtatctgcgcttcctacgttcacaccca
ctgccagagaccgctgtgcgaggttatcggcgcttcctcaagctgagtcctgagagcgcc
gaggagtacatcgagtacctgaagtcaagtgaccggctggatgaggctgcgcagcggctg
gccactgtagtgaatgatgagcgctttgtgtccaaggccggcaagtccaactatcagctg
tggcacgagctgtgtgacctcatctcccagaacccggacaaggtgcagtcgctcaatgtg
gacgccatcatccgcggtggtctcacccgcttcactgaccagctaggaaagctatggtgc
tcactggctgactactacatccgcagcggccactttgagaaggctcgggatgtgtacgaa
gaggccatccgcactgtgatgaccgtgcgggacttcacacaggtgtttgacagctatgcc
cagtttgaggagagcatgatcgccgctaagatggagactgcctctgagctggggcgtgag
gaggaggacgatgtggacctggagctgcgcctggcccgctttgagcagctcatcaatcgg
cggcccctgctcctcaacagcgtcctgctacggcaaaacccacatcacgtgcatgagtgg
cacaagcgcgtggccttgcaccagggccgcccccgggagatcatcaacacctacacagag
gcagtgcagacagtggaccccttcaaggccacaggcaagccccacaccctgtgggtcgca
tttgccaagttttatgaggacaatgggcagctggatgatgcccgcatcatccttgagaag
gccaccaaagtgaactttaagcaggtggatgacctggcaagtgtatggtgccagtgtggg
gagctggagctccggcatgagaattacgacgaggccttgaggctgctgcggaaagcaaca
gcactgcctgcccgccgggccgaatatttcgatagctcagagcctgtgcagaaccgtgtg
tataagtcactgaaggtatggtcgatgctcgctgacctggaggagagcctgggcaccttc
cagtccactaaggccgtgtatgaccgcatcctggacttgcgcatcgccacacctcagatt
gtcatcaactacgccatgttcctggaggagcacaagtacttcgaggagagctttaaggca
tatgagcgaggcatctcactgttcaagtggcccaatgtgtcggacatctggagcacctac
ctgactaaattcatcgctcgctatggaggccgtaagctggagcgggctcgggacctgttc
gagcaggcgctggatggctgtccacccaaatatgccaagaccctgtacctgctatacgca
cagctggaggaagaatggggcctggcccggcacgccatggctgtgtatgatcgcgccacc
agggccgtggagcccgctcagcagtatgacatgttcaacatctatatcaagcgggctgcc
gagatctatggcgtcacccacacccgtggcatctaccagaaggccatcgaggtgctttct
gatgagcacgcccgggagatgtgcctgaggtttgcggacatggagtgtaaactcggggag
atcgaccgtgcccgggccatctacagcttctgctctcagatctgcgacccccggaccact
ggagcattctggcaaacatggaaggactttgaggtccggcacggcaacgaggacaccatc
agggagatgctgcgaatccgtcgcagcgtgcaggctacgtacaacacacaggtcaacttc
atggcttcccagatgctcaaggtgtcaggcagcgccacaggcaccgtgtctgacctggcc
cctgggcagagtggcatggatgacatgaagttgctggagcagcgagcggagcagcttgca
gccgaggctgagcgggaccagcccccgcgagcccagagcaagatcctctttgtgaggagc
gatgcatcccgggaggagctggcagagctggcccagcaggccaaccctgaagagatccag
cttggtgaagaagaggatgaagacgagatggacctggaacccaatgaggtacgactggag
cagcagagcgtgccagctgccgtgttcgggagcctgaaggaagactaa
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