Castor canadensis (American beaver): 109691834
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Entry
109691834 CDS
T04791
Symbol
Abca1
Name
(RefSeq) ATP-binding cassette sub-family A member 1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan02010
ABC transporters
ccan04148
Efferocytosis
ccan04975
Fat digestion and absorption
ccan04979
Cholesterol metabolism
ccan05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
109691834 (Abca1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109691834 (Abca1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
109691834 (Abca1)
04979 Cholesterol metabolism
109691834 (Abca1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
109691834 (Abca1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ccan02000
]
109691834 (Abca1)
Transporters [BR:
ccan02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
109691834 (Abca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
109691834
NCBI-ProteinID:
XP_020027636
UniProt:
A0A8C0X3V9
LinkDB
All DBs
Position
Unknown
AA seq
2262 aa
AA seq
DB search
MACWPQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFFILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDAKRLLLYSYKDT
SMKDMHKVLRTLRQMKDSGSSLKLQDFLVDNETFSAFLHHSLSLPRPAVDRMLQADVSLH
KVFLQGYQLHLADLCNSSKLADVIQIGDPEVSELCGLPREKLDEAERVLHSNLDVLKPIV
TKLNSTSSPFPTKQLAEATRTLLDSLGSLAQELFSMKSWSDMRQEVMFLTNVNSTGSSTQ
IYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNGTEEDADSFYDNSTTPYCNDLM
KNLESSPLSRIIWKALKPLLVGKILYTPDTPATRQVMAEVNKTFQELAVFHDLEGMWEEL
SPKIWTFMENSQEMDLVRTLLNSRSNDRFWEQQLDGLDWTAQDIMAFLAKYPEDVQSTNG
SVYTWREAFNETNQAIQTISRFMECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFT
GITPGSIELPRHVKYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYVWGGFTYLQDV
VEQAIIRVLTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGI
VYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVF
VFLSVFATVTILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFTVKIFA
SLLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTAVSMMLFDTFLYGVMT
WYIEAVFPGQYGIPRPWYFPCTKSYWFGEELDQKTHPGSSQKGLSEICMEEEPTHLKLGV
SIQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYI
LGKDIRSEMSSIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDV
GLPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYR
QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSL
SSCRNSSSTVSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISSLIRKHVSEARLVED
IGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDA
ETSDGTLPARRNRWAFGDKQSCLRPFTEDDAIDPNDSDIDPESRETDLLSGMDGKGSYQV
KGWKLTQQQFLALLWKRLLIARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLEL
QPWMYNEQYTFVSNDAPEDMGTQELLNALTKDPGFGTRCMEGNPILDTPCLVGEEDWTTA
PVPQTIMDLFQNGNWTMENPSPACQCSSDKIKKMLPVCPPGAGGLPPPQRKQNTADTLQN
LTGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGASNSQALPPSQEVNEAIKQMK
KHLKLTKDSSADRFLNSLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQ
KGENPSQYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQE
RVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLA
LLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNNI
NDILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGEDRFVSPLSWDLVGRNLFAMAVE
GVVFFLITVLIQYRFFIRPRPVNTKLPPLNDEDEDVRRERQRILDGGGQNDILEIKELTK
IYPRKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTNVTRGDAFLNKNSILS
NIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGE
KYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVVL
TSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQEFF
GLAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVN
FAKDQSDDDHLKDLSLHKNQTVVDVAMLTSFLQDEKVKESYV
NT seq
6789 nt
NT seq
+upstream
nt +downstream
nt
atggcttgttggcctcagttgaggttgctgctgtggaagaacctgactttcagaagaaga
caaacatgtcagctgttgctggaagtggcctggcctctatttatcttctttatcctgatt
tctgttcggctgagctacccgccctatgaacaacatgagtgccactttccaaataaagcc
atgccctctgcaggaacgcttccttgggttcaggggattatctgtaatgccaacaacccc
tgtttccgttatccgactcctggtgaggctcctggtgttgttggaaactttaacaagtcc
attgtgtctcgcctgttctcagatgctaagaggcttcttttatacagctacaaagacacc
agtatgaaggacatgcataaagttctgagaacattacggcaaatgaaggattctggctca
agtttgaagcttcaggatttcctggtggacaatgaaaccttctctgcattcctgcatcac
agtctctctctcccaaggcctgctgtggacagaatgctgcaggctgatgtcagtctgcac
aaggtatttttgcaaggttaccagttacatttggccgatctttgcaattcatcaaaatta
gcagatgtgattcaaattggtgacccagaagtttctgagctttgtggtctaccacgggag
aaactggacgaagcagagcgagtgcttcattccaatttggacgtcctgaagcctattgtg
acaaaactaaactctacatcatctcccttcccgaccaagcagctggcggaagccacaaga
accttgctggatagtcttgggagtctggcccaagagctgttcagcatgaaaagctggagc
gacatgcggcaggaagtgatgtttctgaccaacgtaaacagcactggctcctccacacag
atataccaggctgtgtcccgaattgtctgtgggcatccggaaggtggggggctgaagatc
aagtctctcaactggtatgaggacaacaactacaaagccctctttggaggcaatggcact
gaggaagatgctgacagcttctatgacaactctacaactccttattgcaatgatttgatg
aagaatttggagtctagtccactttctcgaattatttggaaagctctcaagcctctgctt
gttggaaagattctgtatacacctgacactccagctacaaggcaggttatggctgaggtg
aataagaccttccaggaactggctgttttccacgatctggaaggcatgtgggaagagctt
agccccaagatctggaccttcatggagaacagccaagaaatggaccttgtccggacacta
ctgaatagcagaagcaatgaccgcttttgggaacagcaattggatggcttagattggaca
gcccaagacatcatggcatttctggccaagtacccagaggatgtccagtccactaatggc
tctgtgtacacctggagagaagctttcaatgagaccaaccaggcaatccagacaatatct
cgatttatggagtgtgtcaacctgaacaagctggagcccataccaacagaagtccggctc
atcaacaagtccatggagctgctggatgagaggaagttctgggctggtattgtgttcacg
ggaatcactccaggcagcattgagttgccccggcatgtcaagtataagatccgaatggac
attgacaatgtggagaggacaaataaaatcaaggatgcgtactgggaccctggtcctcgc
gctgacccctttgaagatatgcggtacgtctgggggggcttcacctacttgcaggatgtc
gtggagcaggcaatcatcagggtgttgactggcactgagaagaaaactggtgtctacgta
caacagatgccctacccctgttatgtggatgacatcttcctacgggtgatgagccgctca
atgcccctttttatgaccctggcctggatttactctgtggctgtgatcatcaagggtatt
gtgtatgagaaggaggcacggctgaaggagaccatgaggatcatgggcctggacaatgga
atcctctggtttagctggttcatcagtagcctcatccctctgcttgtgagtgctggcctg
ctggtggtcatcttgaagttaggaaacctgctgccttacagtgatcccagtgtggtgttt
gtcttcttgtctgtgtttgctacggtgaccatcctgcagtgcttcctgataagcacactc
ttctctcgggccaacctggcagcagcctgtgggggcatcatctacttcacgctctacctg
ccttatgtcctgtgcgtggcctggcaggactatgtggggttcacagttaagatctttgcg
agcctgctctctcctgtggcttttggatttggctgtgagtactttgctctttttgaggag
caaggtattggggtgcagtgggacaacctctttgagagccctgtggaggaagatggcttc
aatctcaccactgccgtctccatgatgctgtttgacaccttcctctatggtgtgatgaca
tggtacatcgaggctgtctttccaggtcagtatggaattcccaggccctggtattttcct
tgcaccaagtcctattggtttggtgaggaacttgatcagaagacccaccctggttccagc
cagaagggactatcagaaatctgcatggaggaggaacccacccacctgaaactgggtgta
tccattcagaacctggtgaaggtttaccgagatggcatgaaggtggctgttgatggccta
gcactgaatttttatgagggccagatcacctccttcctgggccataatggagcaggaaag
acaaccactatgtcaatcttgactgggttgttccctcctacctctggcactgcctacatc
ctggggaaggacattcgttctgagatgagcagcatcaggcagaacctgggggtctgtccc
cagcataatgtgctgtttgacatgttgactgtggaagagcacatctggttctatgcccgc
ctcaaggggctgtcagagaagcatgtgaaagcagagatggagcagatggccctggatgtt
ggtttgccacccagcaagttgaaaagcaaaacaagtcagctgtcaggtgggatgcagaga
aagctgtctgtggctttggcctttgtggggggatccaaggttgttattctggatgaaccc
acagctggtgtggacccttactcccgcaggggaatatgggaactgctgctgaaataccga
caaggccgcaccattattctctctacacaccacatggatgaagcagacattttgggagac
aggattgctatcatttcccatggaaagctgtgctgtgtgggttcttctctgtttctcaaa
aaccagctgggaacaggctactacctgaccttggtgaagaaagatgtggaatcctccctt
agttcctgcagaaatagcagcagcactgtatcatacctgaaaaaggaggacagtgtttct
cagagcagttctgatgctggcctgggcagtgaccatgaaagtgacacgctgaccatcgat
gtgtctgctatctccagcctcattaggaagcatgtttctgaagcccgactagtggaagac
attgggcatgagctgacctatgtgctaccatatgaagctgctaaggagggagcctttgtg
gaactcttccatgagattgatgaccggctgtcagacctcggcatctccagttatggcatt
tccgagactaccctagaagaaatatttctcaaagtggctgaagagagtggggtggacgct
gagacttcagatggtaccttgccagcaagacgaaacaggtgggcctttggggacaagcag
agctgtcttcgcccattcactgaagatgatgctattgatccgaatgactctgacatagac
ccagaatccagagagaccgacctgctcagtgggatggatggcaaaggctcctaccaggtg
aagggctggaaactcacacagcaacagtttttggctcttttgtggaagagactgctaatt
gccagacggagtagaaaaggattctttgctcagattgtcctgccagctgtgtttgtctgt
attgccctggtgttcagcctgatcgtgccaccctttggcaagtaccccagcctggaactt
cagccatggatgtacaatgagcagtatacgtttgtcagcaatgatgctcctgaggacatg
ggcacccaggaactcttgaatgccctcaccaaagaccctggctttgggacccgatgtatg
gaaggaaacccaatcctagacacgccctgcttggtgggggaggaggactggaccactgcc
ccagttccccagaccatcatggacctgttccaaaatgggaactggacgatggagaacccc
tcccctgcttgccagtgcagcagtgacaaaatcaagaagatgctgcctgtgtgtccccca
ggagcaggagggctgccacctccacagaggaaacagaacactgctgacacccttcagaac
ctgacgggaagaaacatttcagattatctggtgaagacctatgtgcagatcatagccaaa
agcttaaagaataagatctgggtaaatgagtttaggtatggcgggttttccctgggtgcc
agtaattctcaagcacttcctccaagtcaagaagttaacgaagccatcaaacaaatgaag
aagcacttgaaactgaccaaggacagttctgcagatcgatttctcaacagcttgggaagg
ttcatgacaggtctggacaccaaaaataacgtcaaggtgtggttcaataacaagggctgg
catgctatcagctctttcctgaatgtcatcaacaatgccattctccgggccaacctgcag
aagggagagaatcctagccagtatgggattactgctttcaatcatcccctgaatctaacc
aagcagcagctctcagaggtggctctgatgaccacatcagtagacgtccttgtgtccatt
tgcgtcatctttgccatgtcctttgtcccagccagttttgttgtgttcctgatccaggag
cgggttagcaaagcaaagcacctgcagttcatcagcggggtgaagcctgtcatctactgg
ctctccaattttgtctgggatatgtgcaattatgtggtgcctgctacattggtcattatc
atcttcatctgcttccagcagaagtcctatgtgtcctccaccaacctgcctgtgctagcc
cttttacttttgctgtatgggtggtccatcacacctctcatgtacccagcctcctttgtg
ttcaagatccccagcaccgcctatgtggtactcaccagtgtgaacctcttcatcggcatc
aatggaagtgtggccacttttgtgctagagctcttcaccaacaataagctgaataacatc
aatgacatcctgaagtctgtgttcctgatcttcccacatttttgcctgggacgcgggctc
attgacatggtgaagaaccaggcaatggctgatgcactggaacggtttggggaggatcgc
tttgtgtcaccactgtcttgggacttggtaggacgaaacctttttgccatggccgtggaa
ggggtggtgttcttcctcattactgttctgatccagtacagattcttcattaggcccaga
cccgtaaacacgaagcttcctcctttgaatgatgaggatgaagatgtaaggcgggaaaga
cagagaattctggatggtggaggacagaatgatatcttggaaattaaggagttgactaag
atctacccaaggaagaggaagcctgctgttgacaggatttgtgttggcattccccctgga
gagtgctttggacttctgggagttaatggtgctgggaagtcatccactttcaagatgtta
actggagacaccaatgtcaccagaggcgatgctttccttaataaaaatagcatcttatca
aatatccatgaagtacatcagaacatgggctattgccctcagttcgatgccatcactgag
ctgctgactgggagagagcatgtggagttctttgccctcttgaggggagtcccagagaaa
gaagttggcaaggttggcgaatgggcaattcggaaactgggccttgtgaagtatggagaa
aaatatgctggtaactatagtggaggtaacaagcgcaagctttcaacagccatggctttg
attggtgggcctcctgtggtatttctggatgaaccaaccacaggtatggatcccaaagcc
cggaggttcttgtggaattgtgctctaagcattgtcaaagaggggagatcagttgtgctt
acatctcatagtatggaagaatgtgaagctctttgcacaaggatggcaattatggtcaat
gggagatttagatgccttggcagtgtccaacatctgaaaaacagatttggagatggttat
actatagttgtacgaatagcagggtccaaccctgacctgaagcctgtccaggagttcttt
ggacttgcctttccaggaagcgtcctaaaagaaaaacaccggaacatgttacagtaccag
cttccatcttcattatcttctctggccaggatattcagcatcctctcccagagcaaaaag
cgactccacatagaggactactctgtttctcagacaacacttgaccaagtatttgtgaac
tttgccaaggaccaaagtgacgatgaccacttaaaggatctgtcattacacaaaaaccag
acagtggtggatgttgcaatgctcacatcttttctgcaggatgagaaagtgaaagaaagt
tatgtgtga
DBGET
integrated database retrieval system
