Castor canadensis (American beaver): 109692526
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Entry
109692526 CDS
T04791
Symbol
Smarca4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03082
ATP-dependent chromatin remodeling
ccan04714
Thermogenesis
ccan05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109692526 (Smarca4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
109692526 (Smarca4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
109692526 (Smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccan03021
]
109692526 (Smarca4)
03036 Chromosome and associated proteins [BR:
ccan03036
]
109692526 (Smarca4)
Transcription machinery [BR:
ccan03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109692526 (Smarca4)
Chromosome and associated proteins [BR:
ccan03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
109692526 (Smarca4)
Chromatin remodeling factors
BAF complex
109692526 (Smarca4)
PBAF complex
109692526 (Smarca4)
GBAF(ncBAF) complex
109692526 (Smarca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Htt_C-HEAT
Motif
Other DBs
NCBI-GeneID:
109692526
NCBI-ProteinID:
XP_020028763
UniProt:
A0A8B7VAN2
LinkDB
All DBs
Position
Unknown
AA seq
1715 aa
AA seq
DB search
MVYMGFLLPFLPASLLCTPQPEQPWILLIEALQLLPTVLLYKLKILTTAHKDLPLLASRS
PLPAAPVKMSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSA
GHPLPSQGPGGYPQDSMHQMHKPMESMHEKGMSDDPRYSQMKGMGMRSGGHAGMGPPPSP
MDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPF
NQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGP
GPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANA
AAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPLVPLHQKQSRI
TPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNF
QRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKH
QEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMA
EDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENA
EGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVA
PRSDSEESGSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQ
DVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNN
LNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKV
SYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCK
LTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE
KVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQ
AKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQG
LDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKA
EDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR
IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILE
HEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEE
FDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSR
HRKEVDYSDSLTEKQWLKAIEEGTLEEMEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRD
KDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRK
ELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIV
LQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKTQDRLKGG
RRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggtctacatgggtttcctgcttcctttccttcctgccagccttctctgcactccacag
ccagagcagccatggattctcctgattgaggcccttcaactccttcccactgtgctcctg
tacaagctgaagatcctcaccacagcccacaaggacctccccctcttagcctccaggagc
ccactgcccgcagctccagtgaagatgtccactccagatccacccttgggcggaactcct
cggcccggcccttccccgggtcctggcccctcacctggagccatgctgggccctagcccg
ggtccctcgccaggctcagcgcacagcatgatggggcccagcccagggcctccctcagca
ggacaccctctcccgagccaggggcctggaggataccctcaggacagcatgcatcagatg
cacaagcccatggaatccatgcatgaaaagggcatgtcggatgaccctcgttacagccag
atgaaaggaatgggaatgcgctcggggggccacgcaggcatggggcccccgcccagcccc
atggaccagcactcccaaggttacccctcgcccctgggtggctctgagcatgcctccagt
ccagttccagccagcggcccatcctcgggcccccagatgtcatctgggccaggaggggcc
ccactggatggagccgacccccaggccttggggcagcagaaccggggcccaaccccgttt
aaccagaaccagctgcaccagctccgtgctcagatcatggcctataagatgctggccagg
gggcagcccctccctgaccacctgcagatggccgtgcagggcaagcggccaatgcctggg
atgcaacagcagatgccaacgctacctccgccctcagtgtccgccacaggacctgggcct
ggccctggccctggccctggcccagggccaggaccagcacctccaaattacagcaggcct
catggtatgggaggacccaacatgcctcctccaggaccttcaggtgtgcctcctgggatg
cccggtcagccccctgggggacctcccaagccctggcctgaaggacccatggccaatgct
gctgcacccacaagcacccctcagaagctgatccccccacagccgacgggccgcccttca
cctgcaccccctgctgtcccacctgctgcctcgccagtgatgccaccccagacgcagtcc
ccagggcagccagcccagcctgcacccctggtgccactgcaccagaagcagagccgaatc
acccccatccagaagcccaggggcctggaccctgtggagatcttacaggagcgggagtac
aggctgcaggctcgcatcgctcaccgaattcaggaacttgaaaacctccctggatccctt
gctggggatctgcgaaccaaagcaaccatcgagctcaaggccctcaggctgctgaacttc
cagaggcagctgcgccaggaggtggtggtgtgcatgcggagagacacagccctggagacg
gctctcaatgccaaggcctacaagcgtagcaagcggcagtctctgcgtgaggcccgcatc
actgagaagctggaaaagcagcagaagatcgagcaggaacgcaagcgccgccagaagcac
caggaatacctcaatagcattctgcagcatgccaaggatttcaaagaatatcacagatca
gtcacaggcaaaatccagaaacttaccaaggcggtagccacataccatgccaacacagag
cgggagcagaagaaagaaaatgagcgaatcgaaaaggagagaatgcggaggctcatggca
gaagatgaggagggctaccgcaagctcatcgaccagaagaaggacaagcgcctggcctac
ctcttgcagcagacagatgaatatgtggccaacctcacggagctggtgcggcagcacaag
gctgcgcaggtcgccaaggagaaaaagaagaaaaagaaaaagaagaaggcagaaaatgct
gaaggacagacaccagcaattggaccagatggggagcctctggatgagaccagccagatg
agtgaccttcctgtgaaggtgatccacgtggagagcgggaagatcctcactggaacagat
gcccccaaagccgggcagctggaggcctggcttgagatgaatccagggtatgaagtagct
ccaagatctgacagtgaagaaagtggctcagaagaggaggaggaggaagaggaggaggag
cagccacagccagcacagcctcccaccctgcccgtggaggagaagaaaaagattccagat
ccagacagtgacgatgtctctgaggtggacgcacggcacatcattgagaatgccaagcaa
gatgttgatgatgagtatggtgtgtcacaggccctggcacgtggcctgcagtcctactat
gctgtagcccacgccgtcactgagagagtggataagcagtcagcactgatggtcaatggc
gtcctcaaacagtaccagatcaagggcttggagtggctggtgtccctgtacaacaacaac
ctgaatggcatcctggctgacgagatgggcctggggaagaccatccagaccatcgcactc
atcacgtacctcatggagcacaagcgcatcaatggaccctttcttatcatcgtgcctctc
tcaacgctgtcaaactgggcatacgaatttgacaaatgggccccctccgtggtgaaggtg
tcctacaagggttctccagcagcaagacgggctttcgtcccccagctccgcagtgggaag
ttcaacgtcctgctgacgacctatgagtacatcatcaaagacaaacacatccttgctaag
atccgctggaaatacatgatcgtggacgagggccaccgcatgaagaaccaccactgcaag
ctgacacaagtcctcaacacacactatgtggctccgcggcgcctgctgctgaccggcacg
ccgctgcagaacaagttgcccgaactctgggccctgcttaactttctgctgcccaccatc
ttcaagagctgcagcacctttgagcagtggttcaatgctccctttgccatgaccggggag
aaggtggacctgaatgaggaggagaccatcctcatcatccggcgtctccacaaagtgctg
cggcctttcttgctgcggcggctcaagaaggaagttgaggcccagttgcctgagaaggtg
gaatacgtcatcaagtgtgatatgtctgccctccagcgtgtactctaccgacacatgcag
gccaagggcgttctgctcaccgacggctctgagaaggacaagaagggcaaaggcggcacc
aagaccctgatgaacaccatcatgcagctgcggaagatctgcaaccacccgtacatgttc
cagcacatcgaggagtccttttctgagcatttggggttcaccggtggcatcgtccaagga
ctggatctctaccgagcctcgggtaaatttgaacttctcgacagaattcttcccaaactc
cgtgccaccaaccataaagtgctgctcttctgccaaatgacctccctcatgacaatcatg
gaagattattttgcatatcgtggcttcaaatacctcaggctggatggaaccacaaaggca
gaggaccggggcatgctgctgaaaaccttcaatgagccgggctccgagtacttcatcttc
ctgctcagcacccgcgccggggggctaggcctcaacttgcagtctgccgacactgtgatc
atttttgacagcgactggaatccccaccaggacctgcaagcgcaggaccgcgctcaccgc
attgggcagcagaatgaggtgcgcgtgctccgcctctgcactgtcaacagcgtggaggaa
aagatcctggctgccgccaagtacaagctcaacgtggaccagaaggtgatccaggcgggc
atgtttgaccagaagtcgtccagccatgagcggcgtgccttcctgcaggccatcctggag
cacgaggagcaggatgagagcagacactgcagcacgggcagcggcagtgccagcttcgcc
cacactgcccctccgccagcgggcgtcaaccccgacttggaggagccacctctaaaggag
gaagatgaggtgcccgatgacgagactgtcaaccagatgattgcccggcacgaagaggag
tttgacctgttcatgcgcatggacctggaccgcaggcgtgaggaggcccgcaaccccaag
cggaagccacgcctgatggaggaggatgagcttccatcctggatcatcaaggacgatgcc
gaggtggagcggctgacctgcgaggaggaggaggagaagatgtttggccgtggctcccgc
caccgcaaggaggtggactacagtgactcactgacggagaagcagtggctcaaggccatc
gaggagggcacgctggaggagatggaagaggaggtccggcagaagaagtcatcgcgcaag
cgcaagcgtgacagcgacgccggctcctccacgccgaccaccagcacccgcagccgtgac
aaggacgacgagagcaagaaacaaaagaagcgcgggcggccacccgccgagaagctctcc
ccaaacccccccaacctcaccaagaagatgaagaagatcgtggacgccgtcatcaagtat
aaggacagtagtagtggacgtcagctcagtgaggtgttcatccagctgccctctcgaaag
gagctgcccgaatactacgagctcatccgcaagcccgtggacttcaagaagatcaaggag
cgcatccgcaaccacaagtaccgcagcctcaatgacctggagaaggatgtgatgctgctg
tgccagaatgcacagaccttcaacctcgagggctccctgatctatgaggactccatcgtc
ctgcagtctgtcttcaccagcgtcaggcagaaaattgagaaagaggacgacagcgaaggc
gaggagagtgaagaggaggaggagggcgaggaggaaggctccgagtctgagtcccgctct
gtcaaagtcaagatcaagctgggccgcaaggagaagacacaggatcgcctgaaggggggc
cgccggcggccgagccgcgggtcgcgggccaagcctgtcgtgagtgatgatgacagtgag
gaggaacaagaggaggaccgctcaggaagtggcagcgaggaagactga
DBGET
integrated database retrieval system
