Castor canadensis (American beaver): 109694903
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Entry
109694903 CDS
T04791
Symbol
Upf2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03013
Nucleocytoplasmic transport
ccan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109694903 (Upf2)
03015 mRNA surveillance pathway
109694903 (Upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccan03019
]
109694903 (Upf2)
Messenger RNA biogenesis [BR:
ccan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109694903 (Upf2)
mRNA cycle factors
P-body specific factors
109694903 (Upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
109694903
NCBI-ProteinID:
XP_020032684
UniProt:
A0A250Y7A5
LinkDB
All DBs
Position
Unknown
AA seq
1271 aa
AA seq
DB search
MPAERKKSASMEEKESLLNNKEKDCSERRPVSSKEKPKDDLKITAKKEVSKVPEDKKKKL
EEDKRKKEDKERKKKEEEKVKAEEELKKKEEEEKKKHEEEERKKQEEQAKRQQEEAAAQL
KEKEESLQLHQEAWERHQLRKELRSKNQNAPENRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTVVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPAPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKSCQNKESNKDDSKEAKEPKDNKEVSSPDDLELELENLEINDDTLELEGGDEAE
DLTKKLLDEQDQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
KKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYK
DLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVHDLEQEFLIKLGLVNDKESKD
SMTEGENLEEDEEEEEGGAETEEQSGNESEVNEAEEEEGSDNDDDEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagtcagcaagtatggaagaaaaagaatctttactcaacaac
aaggagaaagactgcagtgaaaggcggccagtgagcagcaaggagaaaccaaaagacgat
cttaagattactgccaagaaggaggtcagtaaggtccctgaagacaaaaagaagaaactg
gaagaagataagagaaaaaaggaagacaaagaacgaaagaaaaaagaagaagaaaaagtg
aaggcagaggaagaattaaagaaaaaagaggaagaagaaaaaaagaaacatgaagaagaa
gagagaaaaaagcaagaagaacaggcaaaacgccagcaagaagaagctgctgctcagctg
aaggagaaagaagaatcccttcagcttcatcaggaagcttgggaacgacatcagttgaga
aaggaacttcgtagcaaaaaccaaaatgctccagaaaaccgaccagaggaaaatttcttt
agtcgtttggactcaagtttgaagaaaaatactgcttttgtcaagaaactaaaaactatt
acagaacaacagagagactccttgtcccatgattttaatggcctgaatttaagcaaatac
attgcagaagctgtagcttccattgtggaagcgaaactgaaaatctctgatgtgaactgt
gctgtgcacctgtgctctctttttcaccagcgctatgctgactttgccccctcacttctt
caggtctggaaaaaacatttcgaagcacgaaaagaggagaaaaccccaaacatcaccaag
ctaagaactgatttgcgtttcattgcagaattgacagttgttgggattttcactgataag
gaaggtctttccttaatctatgaacagctaaaaaatataattaatgctgatcgagaatcc
cacactcatgtttctgtggtgattagtttctgtcgccattgtggagatgacattgctgga
cttgtaccaaggaaagtaaaaagcgctgcagagaagtttaatttgagttttcctcctagt
gagataattagtccagagaaacagcagcctttccagaatcttttaaaagagtactttacg
tctttgaccaaacacctgaaaagggaccacagggagctccagaatactgagagacaaaac
aggcgtattctacattctaaaggggagctaagtgaagacagacataaacaatatgaagaa
tttgccatgtcttatcagaaacttctggcaaattcgcaatccttagcagatcttttggat
gaaaatatgccagatcttcctcaggacaaaccagcaccagaagagcatggacctggaatt
gatatttttacacctggtaaacctggagaatatgacttagaaggtggcatatgggaagat
gaggatgctcggaatttttatgagaacctcattgatttgaaagcttttgttccagccatc
ttgtttaaagacaatgaaaaaagttgccagaacaaggaatctaataaagatgattccaaa
gaggcaaaagaacctaaggataataaggaggtatcaagtcctgatgatttggaacttgag
ttggagaatctagaaattaatgatgacaccttggagttagaaggtggtgatgaagctgaa
gatcttaccaagaaacttcttgatgagcaagaccaagaagatgaagaagccagcactgga
tctcatctcaagctcatagtagatgctttcctccagcagttgcctaactgtgtcaaccga
gatctgattgataaggcagcaatggatttttgcatgaatatgaacacaaaagcaaacagg
aagaagttggtacgagcactcttcatagttcctagacaaaggttggatttgctaccattt
tatgcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggatctttgt
tccatgctgaggggggatttcagatttcatgtacgaaaaaaggaccagataaatattgaa
acaaagaataaaactgttcgctttattggagagctaactaagtttaagatgttcacaaaa
aatgatacactacattgtttaaagatgcttctgtcagacttttctcatcaccatattgaa
atggcatgtaccctactggagacatgtgggcggtttcttttccgatctccagaatcacac
ctgaggactagtgtgcttttggagcaaatgatgagaaagaagcaagcaatgcatcttgat
gcacgatatgtcacaatggtggagaatgcatattactactgcaatccacctccagctgaa
aagacagtgaaaaagaaacgtcctcctctgcaggaatatgtccggaaacttctgtacaag
gatctctctaaggttaccactgagaaggttttgagacagatgcgaaagttgccctggcag
gaccaagaagtgaaagactatgttatttgttgtatgataaacatctggaatgtgaaatat
aatagtattcattgtgtagccaacctcttagcaggactagtgctctatcaagaggatgtt
ggaatccatgtagtggatggagttttagaagatattcgattgggaatggaggtcaatcaa
cctaaattcaatcagaggcgtatcagcagtgccaagttcttgggggaactttataattat
cgaatggtggaatccgctgttatcttcagaaccctctattcttttacttcatttggtgtt
aatcctgatggctctccaagttcactggaccctcctgagcatcttttcagaattagacta
gtatgcactattctggatacctgcggccaatactttgacagaggttccagtaaacggaaa
ctggattgcttcctcgtatattttcagcgttatgtttggtggaagaaaagtttggaggtt
tggacaaaagaccatccatttcctattgatatagattacatgatcagtgatacactagaa
ctgctaagaccaaagatcaaactctgtaattctctggaagaatccatcaggcaggtacac
gacttggaacaagaattcttaataaaactaggcttagtaaatgacaaagagtccaaagat
tctatgacagaaggggaaaatcttgaagaggatgaagaagaagaagaagggggagccgaa
acagaagaacagtctggaaatgaaagtgaagtaaacgaagcagaagaagaggagggttct
gataatgatgatgatgaaggagaagaagaggaggaggagaatacagattaccttacagat
tccaataaagagaatgaaaccgatgaagagaatacggaggtaatgattaaaggaggtgga
cttaagcatgtaccttgtgtagaagatgaggacttcattcaagctctggataaaatgatg
ctagaaaatcttcagcaacgaagtggcgagtcagttaaagtgcaccaacttgatgttgct
atccctttgcatctcaaaagccaactgaggaaaggacccccacttggtggtggagaaggg
gaggcagagtctgcagacaccatgccatttgtcatgttaacaagaaaaggcaataaacag
cagtttaagattcttaatgtgcccatgtcgtcccaacttgctgcaaatcactggaaccag
cagcaggcagaacaagaagagaggatgagaatgaaaaagctcacattagatatcaatgaa
cggcaagaacaagaagattatcaagaaatgttgcagtctcttgcacaacgccctgctcca
gcaaacaccaatcgtgagcgacgacctcgttaccaacatccaaagggagcacctaatgca
gatctaatctttaaaactggtgggaggagacgttga
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integrated database retrieval system
