KEGG   Castor canadensis (American beaver): 109696258
Entry
109696258         CDS       T04791                                 
Symbol
Atg13
Name
(RefSeq) autophagy-related protein 13 isoform X1
  KO
K08331  autophagy-related protein 13
Organism
ccan  Castor canadensis (American beaver)
Pathway
ccan04136  Autophagy - other
ccan04140  Autophagy - animal
ccan04211  Longevity regulating pathway
ccan05010  Alzheimer disease
ccan05014  Amyotrophic lateral sclerosis
ccan05016  Huntington disease
ccan05017  Spinocerebellar ataxia
ccan05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:ccan00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    109696258 (Atg13)
   04136 Autophagy - other
    109696258 (Atg13)
 09150 Organismal Systems
  09149 Aging
   04211 Longevity regulating pathway
    109696258 (Atg13)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    109696258 (Atg13)
   05014 Amyotrophic lateral sclerosis
    109696258 (Atg13)
   05016 Huntington disease
    109696258 (Atg13)
   05017 Spinocerebellar ataxia
    109696258 (Atg13)
   05022 Pathways of neurodegeneration - multiple diseases
    109696258 (Atg13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ccan04131]
    109696258 (Atg13)
   03029 Mitochondrial biogenesis [BR:ccan03029]
    109696258 (Atg13)
Membrane trafficking [BR:ccan04131]
 Autophagy
  Autophagosome formation proteins
   ULK complex
    109696258 (Atg13)
   Atg1 complex
    109696258 (Atg13)
Mitochondrial biogenesis [BR:ccan03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Parkin-independent mechanism factors
    109696258 (Atg13)
SSDB
Motif
Pfam: ATG13
Other DBs
NCBI-GeneID: 109696258
NCBI-ProteinID: XP_020034829
UniProt: A0A250Y2U9
LinkDB
Position
Unknown
AA seq 550 aa
METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYASSSPMHPCNYRTAGEDAGI
TYPSVEDSQEVCTTSFSTSPPSQCVFTVTKAHFQTPTPVVTDTLRVPMAGLAFSHQLSSS
RLSYQPAVLGLGSADLAYPVVFAAGLNATHPHQLMVPGKEGGVPLAPTQPVHAAQAEQER
LATHTPADGIHCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTL
TSLDIPFAMFAPKNLELEDADPMVNPPDSPETTSPLHGSLHSNGSSGDSSSNAHDDFVMI
DFKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPERLAVHEKNVR
EFDAFVETLQ
NT seq 1653 nt   +upstreamnt  +downstreamnt
atggaaactgatcttaattcccaggacagaaaggacctggacaagtttattaaatttttt
gccctcaagactgtccaagtgattgtccaggctcgacttggtgaaaagatttgtactcgt
tcatcttcttctccaacgggttcagattggtttaatttagcaatcaaagacatcccagag
gttacccatgaagcaaagaaggcactggctgggcagcttcctgctgtggggcgctctatg
tgtgtggagatctcactcaagacttctgagggagattccatggagctggaaatttggtgt
cttgaaatgaatgaaaagtgtgataaagaaatcaaagtttcctacacggtgtacaacaga
ctgtcactgctgctgaaatctcttcttgccataactagggtgacgccagcttacagactc
tccagaaaacaagggcatgaatatgtcatattgtacaggatatattttggggaagttcag
ctgagtggcttaggagaaggcttccagacagttcgagttgggacagtgggcacccctgtt
ggcaccatcactctttcctgtgcttacagaattaatttggcattcatgtccaccaggcaa
tttgagaggaccccacctatcatggggattatcattgatcattttgtggaccgtccctat
gctagctcctctcctatgcacccctgcaattacagaactgctggtgaggatgctggaata
acatacccatcagtggaagactctcaagaagtgtgtaccacctccttttccacctctcct
ccctcccagtgtgtgtttactgtcacaaaggcacattttcagacccctactcctgtggtg
acggacactctgagggtccccatggcaggactggccttttcccatcaactctcaagctct
cgcctttcctatcagcctgctgtcctgggccttggatcagctgacctggcttatccagta
gtgtttgctgctggcttaaatgctacacaccctcaccagcttatggttcctgggaaggaa
ggtggagtaccccttgctcccacccagcccgtacacgctgcccaggctgagcaagagaga
ctggcaactcacactcctgctgatggtatccactgtgctgccacaccttccagcagtgag
gacactgaaactgtatccaacagcagcgagggacgggcctccccacatgatgtcttggag
acaatctttgtccgaaaagtgggagcttttgtcaacaaacccatcaaccaggtgactctg
acaagtttggacatcccctttgccatgtttgctcctaagaatttggagctggaagatgct
gatcctatggtgaaccctccagactccccagaaacaacatctcctctccatggcagcctg
cactcaaatggctccagtggggacagcagcagtaatgcccatgacgactttgtgatgatc
gactttaaaccagctttctctaaagacgacattcttccaatggacttggggaccttctat
cgtgaatttcagaacccccctcagctgagcagcctctccatagatattggagcccagtcc
atggctgaagacttggactcattaccagagaggctggctgttcatgagaagaacgtccgt
gaatttgatgcctttgtagaaactctgcagtaa

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