Castor canadensis (American beaver): 109696514
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Entry
109696514 CDS
T04791
Symbol
Prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109696514 (Prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccan03041
]
109696514 (Prpf40a)
Spliceosome [BR:
ccan03041
]
Complex A
U1 snRNP components
U1 related factors
109696514 (Prpf40a)
Complex B
109696514 (Prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
109696514
NCBI-ProteinID:
XP_020035172
UniProt:
A0A8B7VU47
LinkDB
All DBs
Position
Unknown
AA seq
1037 aa
AA seq
DB search
MQATPSEAGGELRQSCVSAAHSDWSVRKPVSLLAPLVPPRSAGQPLPFGPSGRQPLRSLL
VGMCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESHPPSRGPGDGERRLSGSSLCSSSW
VSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGM
MSSVMPGMMMSHMSQASMQPALPPGVNSMDIAAGATAGAKSMWTEHKSPDGRTYYYNTET
KQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQN
TIVAGGLITKSNLHAMIKAEESSKQEECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAA
AAAAAAAAAAANASASTSTSNTAGSVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTN
ISAIQDLSVEVASNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELL
KEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAK
ESFQRFLENHEKMTSTTRYKKAEQMFGELEVWNAISERDRLEIYEDVLFFLSKKEKEQAK
QLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEH
IRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDI
RFTNMLGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFV
AIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPP
IELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKK
HHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRR
HKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEG
ELEKRRRTLLEQLDDDQ
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccaagtgaggctgggggcgaattacggcagagctgcgtgtcagcggcg
cactctgattggtcagtgaggaagcctgtcagcttattggccccgctggttccgccccgt
agcgcagggcagcctttaccctttggccccagcgggcgccagccactcagatcgcttctt
gttggtatgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatgaggccg
ggaacgggagctgagcgtggaggcctcatggtgagtgaaatggagagccatcctccttcg
cggggtcccggggacggggagcggagattgtccggctcaagcctctgctccagctcttgg
gtctctgctgacggcttcctgagaagacggccctcgatggggcaccctggcatgcattat
gcaccaatgggaatgcaccctatgggtcagagagcaaatatgcctcctgtacctcatgga
atgatgccacaaatgatgccccctatgggagggccgccaatgggacaaatgcctggaatg
atgtcatcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatgcaacct
gctttaccgccaggagtaaatagtatggatatagcagcaggtgcaactgctggcgcaaag
tcaatgtggacagaacataaatcacccgatggcaggacatattactacaatactgaaaca
aaacagtctacctgggagaaacctgatgatcttaaaacacctgctgagcaactgttatct
aaatgcccctggaaggagtacaaatctgattcaggaaagccttattattataattctcaa
acaaaagaatcccgctgggccaaacctaaagaacttgaagatcttgaaggataccagaat
accattgttgctggaggtcttattacaaaatcaaacctgcatgccatgatcaaagctgaa
gaaagcagcaaacaagaagagtgcaccacaacatcaacagccccagtccctacaacagaa
attcccaccactatgagcaccatggctgctgcagaagcagcagctgctgttgttgcagct
gcagccgcagccgcagcagctgcggctgcagccaatgccagtgcttccacttctactagt
aatactgccggaagtgttccagtggttcccgagcctgaagttacttccatcgtagctact
gttgtagataatgaaaatacagtaactatatcaactgaggaacaagcacaacttactaat
atctctgctattcaagatctaagtgttgaagtagccagtaatactggagaagaaacatct
aagcaagaaactgtagctgattttactcccaagaaagaagaggaggagagccaaccagcc
aaaaaaacatatacttggaatacaaaggaggaagcaaagcaagcatttaaagaattattg
aaagagaagcgggtgccatccaatgcttcatgggagcaagctatgaaaatgatcattaat
gatccacgatacagtgctttagcaaagttgagtgaaaagaagcaggccttcaatgcgtat
aaagtccagacagagaaagaagaaaaagaagaagcaagatcaaaatataaagaggctaag
gaatcctttcagcgttttcttgaaaatcatgaaaaaatgacttccacaaccagatacaaa
aaagcagaacaaatgtttggagagctggaagtctggaacgcaatatcagaacgtgatcgt
cttgaaatatatgaagatgttttgttctttctgtcaaaaaaagaaaaggaacaagcaaag
cagttacgaaagaggaattgggaggctttaaaaaacattcttgacaacatggctaatgta
acttactccactacttggtctgaagcccagcagtatctgatggataatccaacttttgca
gaagatgaggaattacagaacatggacaaagaagatgcattaatttgctttgaagaacac
attcgggctttagaaaaggaagaagaagaagaaaaacagaagagtttgctgagagaaagg
agacgacagcgtaaaaatagggaatcttttcagatatttttagatgaattgcatgaacat
ggacaactacattctatgtcatcttggatggaattgtatccaactattagttctgacatt
agattcactaatatgcttggtcagcctgttttttcattaggatcaactgcacttgatctt
ttcaagttttatgttgaggatcttaaagcacgttatcatgatgaaaaaaagataataaag
gatattctaaaggataaaggatttgtagttgaagtaaatactacttttgaagattttgtg
gcaataatcagttcaactaaaagatcaactactttggatgctggaaatatcaaattggct
ttcaatagtttactagaaaaggcagaagcccgagaacgtgaaagagaaaaggaagaggct
cggaagatgaaacgaaaggaatctgcatttaagagtatgttgaaacaagctactcctcca
atagagttggatgctgtctgggaagatatccgggagagatttgtaaaagagccagcattt
gaagacataactctagaatctgaaagaaaaagaatatttaaagattttatgcatgtgctt
gagcatgaatgtcaacatcatcattcaaagaacaagaaacactcaaagaaatcaaaaaaa
catcataggaaacgttcccgatctcgatcggggtcagattcagatgatgatgacagccac
tcaaagaaaaaaaggcagcggtcagaatcccgttctgcttcagaacattcttccagcgcg
gagtctgagagaagttataagaaatcaaaaaagcataagaagaaaagcaagaaaaggaga
cataaatctgactctccagaatctgatgctgagcgagagaaggataaaaaagaaaaagac
cgggaaagtgaaaaagacagaactagacaaagatcagaatcaaaacacaaatcacccaag
aaaaagactggaaaggattctggtaattgggatacttctggcagtgaactgagtgaaggg
gaattagaaaaacgaagaagaacccttttggaacagctggatgatgatcaataa
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