Castor canadensis (American beaver): 109699643
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Entry
109699643 CDS
T04791
Symbol
Palb2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03440
Homologous recombination
ccan03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109699643 (Palb2)
03460 Fanconi anemia pathway
109699643 (Palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccan03400
]
109699643 (Palb2)
DNA repair and recombination proteins [BR:
ccan03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
109699643 (Palb2)
FA (Fanconi anemia) pathway
Downstream FA components
109699643 (Palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
WD40_WDHD1_1st
Beta-prop_WDR19_1st
DUF3403
Motif
Other DBs
NCBI-GeneID:
109699643
NCBI-ProteinID:
XP_020040039
UniProt:
A0A8C0ZVH7
LinkDB
All DBs
Position
Unknown
AA seq
1119 aa
AA seq
DB search
MEEAPGKPLSCAEKEKLKEKLAFLKREYSKTLARLQRAQRAEKVKNSIKKTVEQDDLLQQ
ELSPLPTHPEPENEGSACNRFQINTHLVEETEEKTSVTLDVHPESFNPEDGPEELHTQRA
DDIQEHFPNRISGPNGEKRQSELQGKRKKQPKKMFTSQERECFFDTNSLMLSGKRFKKQE
AISNKNPRSPATEINYLAYPEPEIPDSPAPVIETEGESVLIPPTAARDADSAFGESHFSK
ETAVPLHTTSDNSNSQLLTYMPPKGNWELTTPGFRNTSPASPINLETQDRKMAVCTDNPV
VNNTMSVSDQVSRYPNLEANNSCSVNEVTYSNLQANISQNLKEPNHTGKSLKCPVRNESL
QENADLSQSKSLSLQADSPMSTENQMHSCTMLEGLLFPAEYYVRTTRRMSDCQRKAALEA
VIQSHLGVRKKGFKNKDKETTKDLSLCTEENDQSEFSTRDTCIGQPSSRSPSQELLSVAE
VGSSTVPTEGDFCRKAVTQPTAKRHRGKRKSACTLALDHCELLLPISRALGVNWLKEEIV
WHKHQSGKAIIHDFQLPDEDFGALKLEKLKSSEKLIRPLESKVSRESHLHKGNCTLLRGQ
IAEAGDLEEEPAAVPGKAHPYVPSLKSQDSSKGLSASMLLFTPLNTTAPDESNRPPADLC
SPAFPILGTTPAFGSQVSYEKVSAEVVGRTCSTPQLSHLEDTVGLINDSEQLDSSTGPPK
LDTSLHMSGRLGQSACDRDSGPQATPLSIESFRENQLCGNACLELHEHSIGQTEIADPAG
DNLNPGSLQLVSKLKNPSSSCSVDVSTLWWERAGFKEPCIITACEYVVSLWKPMDTWQWK
KIYTWHFAEVPVLQIVPVPDVCNLVCVALGNLEIREIRALLWSSDGESEKQVLLTSGNIK
TALGLTKRRLVSSSGALCDQQVEVMTLSEDGGSKEKQFLMPPEETILTFAEVQEMQEALL
GTTVMNNIVIWNLKTGQLLRKMHIDDSCHASVCHRAYSEKGLLFVVLSHPCAKESEWLGS
PVFQLMVINPKTTLNVGVLLYCLPQGQAGRFLEGDVKDHFAAAVLTSGTIAIWDLLLGHC
TALLPPISDQNWSFVKWSATDSHLLAGQKDGNIFIYRYL
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggctcccgggaagcccctgagctgtgcggagaaggaaaagctgaaggaaaaa
ctagcattcttgaaaagggaatacagcaagacattggcccgccttcagcgtgcccaaaga
gctgagaaggttaaaaattctattaagaaaacagtagaacaagatgacttgctgcagcaa
gaactctcaccactaccaacccacccagagcctgaaaatgaaggatctgcttgcaacagg
ttccaaatcaacacccatcttgttgaggagactgaagaaaaaacatctgtgacacttgat
gttcatcctgaatcctttaaccctgaagatggcccagaagaattacatacacaaagagca
gatgacatccaagaacattttcccaacaggatcagtggccctaatggtgagaaaaggcag
agtgagctacaagggaagagaaagaagcagccaaagaaaatgtttacttcacaggaaaga
gaatgtttctttgataccaattcactcatgctctctggaaaaagattcaagaaacaagaa
gcaatcagtaacaaaaaccctaggtcaccagcaactgaaataaattaccttgcatatcct
gagcctgaaattccagattctccagcaccagttatagaaactgagggagagagtgtgttg
attccaccaactgctgcaagagatgctgattcagccttcggagagagtcatttctccaag
gagactgcagttcctctgcatactacctcagacaacagcaacagtcagctgcttacatat
atgcctcctaaaggtaactgggaacttaccactccagggtttagaaataccagccctgct
tcacctataaacctggagacacaagacagaaaaatggctgtctgtacagataaccccgta
gtaaataacaccatgagtgttagtgaccaggtatccagataccccaacttagaggcgaat
aattcatgttctgtaaatgaagttacttacagtaacttacaagcaaatataagccaaaac
ttaaaagaaccaaatcacacaggaaaatctttaaaatgtcctgttagaaatgaaagtctt
caggaaaatgcagatctaagtcagtctaagagtcttagcctacaagcagactctcctatg
tctacagaaaatcaaatgcattcttgcacgatgcttgaaggccttctgtttcctgcagag
tactatgttagaacgacacgtcgcatgtcagattgccagaggaaagcagccctggaagct
gtaattcagagtcatttaggtgtccggaagaaaggctttaaaaataaagataaggaaaca
acaaaagatttaagcctttgtactgaagaaaatgaccaaagtgagtttagcacacgggac
acgtgcataggccaaccaagttcaagaagtccttctcaggaacttctgtcagtagctgaa
gtcggctcttctacagtgcccactgaaggtgacttttgtaggaaggctgttacacagcca
actgctaaaagacacagaggaaaacgaaaatcagcctgcaccttggcactggatcactgt
gaactgcttttgccaatttccagagccctgggggttaattggctcaaggaagagatcgtc
tggcacaagcatcagagtggaaaagcaattattcatgactttcagttacctgatgaagat
tttggggctcttaagcttgaaaaactgaagtcctcagaaaaactgattaggcctcttgaa
tcaaaagtatctagagaaagtcatcttcacaaggggaattgtactcttctgaggggacag
attgcagaagcaggggacttagaggaggagcctgctgctgtaccgggaaaagcacatcct
tacgtaccaagcctcaagagtcaggattcaagcaagggtctttctgcatccatgctactt
ttcactcctttaaataccactgcccctgatgaaagcaacagacctcctgcagacctgtgt
tcacctgcttttcccatcttgggcaccactccggcttttggttctcaagtgtcctatgaa
aaggtatctgctgaggttgttggacgaacctgctctacaccccaactgtctcatttggaa
gacacagttggtcttattaatgatagtgaacaattggacagttcaaccggcccaccaaaa
ctggataccagcctgcacatgtcaggtaggctaggacagtctgcctgtgaccgtgactct
ggcccccaagcaacacctctatccattgagtcattcagagaaaatcagctctgtggaaat
gcatgcctggagttgcatgaacattccattggacagactgaaatagcagatcctgctggt
gataatttaaacccaggcagcctacaattggtttcaaagttgaagaatccttccagttcc
tgttctgtggatgtgagcaccctgtggtgggaaagagctggatttaaggagccgtgtatc
ataactgcttgtgaatatgtagtttctctttggaaacctatggatacttggcaatggaaa
aaaatttatacctggcactttgcagaggttccagtattacaaatagttccagtgcctgat
gtttgcaatcttgtgtgtgtagctttgggaaatttggaaatcagagaaatcagggcattg
ctttggtcctctgatggtgaaagtgaaaagcaagtgctgctgacatctggaaatataaaa
actgctcttggcctgaccaagagaaggctagtgagtagtagtggggccctttgtgatcaa
caagtggaagttatgacactttcagaagatggaggaagcaaagaaaaacagtttttgatg
cctcctgaagagactatactgacttttgctgaggtacaagagatgcaggaagctcttctt
ggtactactgttatgaacaacattgttatctggaatttaaaaactggtcaactcctgaga
aagatgcacattgatgactcttgtcatgcttcagtctgtcacagagcctattctgaaaag
ggactcctttttgttgttctgagtcatccttgtgccaaagagagtgagtggttgggaagc
cctgtgtttcagctgatggtgatcaaccctaagacaaccctgaatgtgggcgtgctgctg
tactgccttccccaaggacaggctgggaggttcctggaaggagatgtgaaagatcatttt
gcagcagcagtcttgacttccggaacaatcgccatttgggacttacttctaggacattgc
acagctctccttccgcccatctctgaccagaattggtcttttgttaagtggtcagctaca
gattctcatttgctggccggacagaaagatggaaatatatttatataccgttacttataa
DBGET
integrated database retrieval system
