Clavibacter capsici: AES38_01905
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Entry
AES38_01905 CDS
T05227
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ccap
Clavibacter capsici
Pathway
ccap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AES38_01905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccap03019
]
AES38_01905
03400 DNA repair and recombination proteins [BR:
ccap03400
]
AES38_01905
Enzymes [BR:
ccap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AES38_01905
Messenger RNA biogenesis [BR:
ccap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AES38_01905
DNA repair and recombination proteins [BR:
ccap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AES38_01905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HTH_IclR
Pribosyltran
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALD11862
UniProt:
A0AAE6XN36
LinkDB
All DBs
Position
374498..376672
Genome browser
AA seq
724 aa
AA seq
DB search
MPDTATPPIAAAPADLRSAAREHLSRLVGVAGADFHDGQYEAIEALVQDRSRALVVQRTG
WGKSAVYFVATLLLRQQGLGPTLLVSPLLALMRDQVAAARRAGVRAVAMNSSNAHEWDDL
LRALDADEVDLLLVSPERLNNPRFRDEQLPALRARLGLLVVDEAHCISDWGHDFRPDYRR
LRDLISSVDERVPVLATTATANSRVVADVEEQLSVGSTARGAVETERVPVVTIRGPLARR
SLRLGVLRLENSRDRLGWLLSHLDELPGSGIIYALTVSAAQDTARLLRDAGHAVKAYTGR
DDPADREQAEGELQRNEVKALVATSALGMGFDKPDLGFVVHLGAPSSPVSYYQQVGRAGR
GSADADVLLLPGREDPDIWQYFATASMPDEQQAASVIQSLGESDRPLSVPALESRVSLSR
SRLDLLLKVLDVDGAVRRDTSGWSATGVPWTYDRARYEQVAAARVREQQAMLDYETTLGC
RMEFLQRQLDDDTAAPCGRCDRCAGAWYPASLDQQASATASQALDRVGLPIEPRLRWPTG
ASSVGVPLSGAIAAGEQVDEGRALARLTDLGWGGRLRTVFAAGAEDAPVDDALVAACVRV
LAEWGWAERPRAVVHVPSASRPQLVGSLAQRIAEVGRLPFLGSLDLVDPGAPGAARGNSV
YRLGRVHPRFQVPAHLADDLAADPRPVLLVDDLVDTRWTLTVAGRLLRRAGATRVLPFAL
AQQG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacaccgccacgccgcccatcgccgccgcgcccgccgatctccgatccgccgcc
cgcgagcacctctcccggctggtcggcgtcgcgggcgccgacttccacgacgggcagtac
gaggccatcgaggcgctcgtgcaggaccgctcccgcgccctcgtcgtgcagcgcaccgga
tggggcaagtcggccgtctacttcgtcgccaccctgctcctccgccagcagggcctcggc
cccacgctcctcgtctcgccgctgctggccctcatgcgcgaccaggtcgcggcggcgcgg
cgggcgggcgtccgcgcggtcgccatgaactcgagcaacgcgcacgagtgggacgacctg
ctgcgcgcgctcgacgccgacgaggtcgacctcctgctcgtctcgcccgagcgcctcaac
aacccgcgcttccgcgacgagcagctgccggccctccgcgcgcggctcggcctcctcgtg
gtcgacgaggcgcactgcatctccgactggggccacgacttccggcccgactaccgccga
ctccgcgacctcatctcctcggtcgacgagcgcgtgcccgtgctcgccaccaccgccacc
gcgaactcgcgcgtggtggccgacgtggaggagcagctgagcgtcggatccaccgcccgc
ggtgccgtcgagaccgagcgcgtgccggtggtcaccatccgcgggccgctcgcccggcgg
tcgctgcggctcggcgtgctccggctcgagaacagccgcgaccggctcgggtggctcctc
agccacctcgacgagctgcccggcagcggcatcatctacgcgctcaccgtctcggccgcg
caggacacggcacggctgctgcgcgacgccgggcacgcggtcaaggcgtacacgggccgc
gacgacccggccgaccgcgagcaggccgagggcgagctgcagcgcaacgaggtcaaggcg
ctcgtcgccaccagcgcgctcgggatggggttcgacaagcccgacctcggcttcgtcgtg
cacctcggagcgccgtcgtcgcccgtctcctactaccagcaggtcggccgcgcgggccgc
gggtccgcggacgccgacgtgctgctcctgcccggccgagaggatccggacatctggcag
tacttcgccaccgcgtccatgcccgacgagcagcaggccgcctccgtcatccagtcgctc
ggcgagagcgaccggccgctgtcggtgcccgcgctcgagtcgcgcgtcagcctctcccgc
agccggctcgacctcctgctcaaggtgctcgacgtggacggcgccgtgcggcgggacacc
tcgggctggtcggccacgggcgtcccgtggacctacgaccgcgcccgctacgagcaggtc
gccgcggcgcgcgtgcgcgagcagcaggcgatgctcgactacgagaccacgctcggctgc
cggatggagttcctccagcgccagctcgacgacgacaccgccgctccctgcgggcgctgc
gaccggtgcgccggtgcgtggtacccggcgtcgctcgaccagcaggcgtcggccacggcg
tcgcaggcgctcgaccgcgtcgggctgccgatcgagccgcggctccgctggcccaccggt
gcgtcgagcgtcggcgtgccgctgagcggcgccatcgccgccggcgagcaggtcgacgag
ggccgtgccctcgcgcgcctcaccgacctcggctggggcgggcggctccgcacggtcttc
gcggccggcgccgaggacgcgccggtcgacgacgcgctcgtcgccgcctgcgtccgcgtc
ctcgccgagtggggctgggccgagcggccgcgcgccgtcgtgcacgtgccgtcggcgagc
cgcccgcagctcgtggggagcctcgcccagcgcatcgcggaggtggggcggctgccgttc
ctcgggtcgctcgacctggtggatccgggtgctcccggcgccgcccgcggcaacagcgtc
tatcggctcgggcgggtgcacccacggttccaggtgcccgcgcacctcgcggacgacctc
gccgcggatccgcgcccggtgctcctcgtggacgacctcgtcgacacgcgctggacgctc
acggtcgccgggcgcctgctgcgccgggccggcgccacgcgcgtcctgccgttcgcgctc
gcgcagcaggggtag
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